Literature DB >> 25067980

Development of 14 microsatellite markers in the Queensland koala (Phascolarctos cinereus adustus) using next generation sequencing technology.

Christina T Ruiz-Rodriguez1, Yasuko Ishida1, Alex D Greenwood2, Alfred L Roca1.   

Abstract

We report the development of 14 new microsatellite markers in the Queensland koala (Phascolarctos cinereus adustus). Ten unrelated Queensland koala individuals from the San Diego Zoo, USA, were genotyped. The number of alleles per locus ranged from 2 to 7, with an average of 5.14 alleles per locus. Across all loci, the average observed and expected heterozygosity values were both 0.69. These polymorphic microsatellite loci will be useful for genetic studies relevant to the conservation of the koala, a species listed as vulnerable.

Entities:  

Keywords:  454 GS-FLX Technology; conservation genetics

Year:  2014        PMID: 25067980      PMCID: PMC4109682          DOI: 10.1007/s12686-013-0115-2

Source DB:  PubMed          Journal:  Conserv Genet Resour            Impact factor:   0.973


  1 in total

1.  msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design.

Authors:  Brant C Faircloth
Journal:  Mol Ecol Resour       Date:  2008-01       Impact factor: 7.090

  1 in total
  8 in total

1.  Proliferation of endogenous retroviruses in the early stages of a host germ line invasion.

Authors:  Yasuko Ishida; Kai Zhao; Alex D Greenwood; Alfred L Roca
Journal:  Mol Biol Evol       Date:  2014-09-25       Impact factor: 16.240

2.  Koalas (Phascolarctos cinereus) From Queensland Are Genetically Distinct From 2 Populations in Victoria.

Authors:  Christina T Ruiz-Rodriguez; Yasuko Ishida; Neil D Murray; Stephen J O'Brien; Jennifer A M Graves; Alex D Greenwood; Alfred L Roca
Journal:  J Hered       Date:  2016-08-11       Impact factor: 2.645

3.  Population genetic diversity and hybrid detection in captive zebras.

Authors:  Hideyuki Ito; Tanya Langenhorst; Rob Ogden; Miho Inoue-Murayama
Journal:  Sci Rep       Date:  2015-08-21       Impact factor: 4.379

4.  Phylogeography of the Koala, (Phascolarctos cinereus), and Harmonising Data to Inform Conservation.

Authors:  Linda E Neaves; Greta J Frankham; Siobhan Dennison; Sean FitzGibbon; Cheyne Flannagan; Amber Gillett; Emily Hynes; Kathrine Handasyde; Kristofer M Helgen; Kyriakos Tsangaras; Alex D Greenwood; Mark D B Eldridge; Rebecca N Johnson
Journal:  PLoS One       Date:  2016-09-02       Impact factor: 3.240

5.  Koala retrovirus viral load and disease burden in distinct northern and southern koala populations.

Authors:  Nishat Sarker; Jessica Fabijan; Helen Owen; Jennifer Seddon; Greg Simmons; Natasha Speight; Jasmeet Kaler; Lucy Woolford; Richard David Emes; Farhid Hemmatzadeh; Darren J Trott; Joanne Meers; Rachael Eugenie Tarlinton
Journal:  Sci Rep       Date:  2020-01-14       Impact factor: 4.379

6.  Development and characterization of microsatellite markers in the African forest elephant (Loxodonta cyclotis).

Authors:  Natalie A Gugala; Yasuko Ishida; Nicholas J Georgiadis; Alfred L Roca
Journal:  BMC Res Notes       Date:  2016-07-26

7.  Fresh is best: Accurate SNP genotyping from koala scats.

Authors:  Anthony J Schultz; Romane H Cristescu; Bethan L Littleford-Colquhoun; Damian Jaccoud; Céline H Frère
Journal:  Ecol Evol       Date:  2018-02-18       Impact factor: 2.912

8.  Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments.

Authors:  Shannon R Kjeldsen; Herman W Raadsma; Kellie A Leigh; Jennifer R Tobey; David Phalen; Andrew Krockenberger; William A Ellis; Emily Hynes; Damien P Higgins; Kyall R Zenger
Journal:  Heredity (Edinb)       Date:  2018-09-12       Impact factor: 3.821

  8 in total

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