Literature DB >> 25064823

Mathematical modeling of physiological systems: an essential tool for discovery.

Patric Glynn1, Sathya D Unudurthi1, Thomas J Hund2.   

Abstract

Mathematical models are invaluable tools for understanding the relationships between components of a complex system. In the biological context, mathematical models help us understand the complex web of interrelations between various components (DNA, proteins, enzymes, signaling molecules etc.) in a biological system, gain better understanding of the system as a whole, and in turn predict its behavior in an altered state (e.g. disease). Mathematical modeling has enhanced our understanding of multiple complex biological processes like enzyme kinetics, metabolic networks, signal transduction pathways, gene regulatory networks, and electrophysiology. With recent advances in high throughput data generation methods, computational techniques and mathematical modeling have become even more central to the study of biological systems. In this review, we provide a brief history and highlight some of the important applications of modeling in biological systems with an emphasis on the study of excitable cells. We conclude with a discussion about opportunities and challenges for mathematical modeling going forward. In a larger sense, the review is designed to help answer a simple but important question that theoreticians frequently face from interested but skeptical colleagues on the experimental side: "What is the value of a model?"
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Arrhythmia; Electrophysiology; Mathematical modeling

Mesh:

Year:  2014        PMID: 25064823      PMCID: PMC4144804          DOI: 10.1016/j.lfs.2014.07.005

Source DB:  PubMed          Journal:  Life Sci        ISSN: 0024-3205            Impact factor:   5.037


  49 in total

1.  Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia.

Authors:  C E Clancy; Y Rudy
Journal:  Nature       Date:  1999-08-05       Impact factor: 49.962

2.  Cardiac action and pacemaker potentials based on the Hodgkin-Huxley equations.

Authors:  D NOBLE
Journal:  Nature       Date:  1960-11-05       Impact factor: 49.962

Review 3.  Systems biology: an approach.

Authors:  P Kohl; E J Crampin; T A Quinn; D Noble
Journal:  Clin Pharmacol Ther       Date:  2010-06-09       Impact factor: 6.875

4.  Theory of physiological properties of dendrites.

Authors:  W RALL
Journal:  Ann N Y Acad Sci       Date:  1962-03-02       Impact factor: 5.691

5.  Rate dependence and regulation of action potential and calcium transient in a canine cardiac ventricular cell model.

Authors:  Thomas J Hund; Yoram Rudy
Journal:  Circulation       Date:  2004-10-25       Impact factor: 29.690

6.  Regulation of Ca2+ and electrical alternans in cardiac myocytes: role of CAMKII and repolarizing currents.

Authors:  Leonid M Livshitz; Yoram Rudy
Journal:  Am J Physiol Heart Circ Physiol       Date:  2007-02-02       Impact factor: 4.733

7.  Mechanisms of use-dependent block of sodium channels in excitable membranes by local anesthetics.

Authors:  C F Starmer; A O Grant; H C Strauss
Journal:  Biophys J       Date:  1984-07       Impact factor: 4.033

Review 8.  Whole-heart modeling: applications to cardiac electrophysiology and electromechanics.

Authors:  Natalia A Trayanova
Journal:  Circ Res       Date:  2011-01-07       Impact factor: 17.367

9.  Oxidized CaMKII causes cardiac sinus node dysfunction in mice.

Authors:  Paari Dominic Swaminathan; Anil Purohit; Siddarth Soni; Niels Voigt; Madhu V Singh; Alexey V Glukhov; Zhan Gao; B Julie He; Elizabeth D Luczak; Mei-ling A Joiner; William Kutschke; Jinying Yang; J Kevin Donahue; Robert M Weiss; Isabella M Grumbach; Masahiro Ogawa; Peng-Sheng Chen; Igor Efimov; Dobromir Dobrev; Peter J Mohler; Thomas J Hund; Mark E Anderson
Journal:  J Clin Invest       Date:  2011-07-25       Impact factor: 14.808

10.  Two components of the delayed rectifier K+ current in ventricular myocytes of the guinea pig type. Theoretical formulation and their role in repolarization.

Authors:  J Zeng; K R Laurita; D S Rosenbaum; Y Rudy
Journal:  Circ Res       Date:  1995-07       Impact factor: 17.367

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  8 in total

1.  Modeling Lymph Flow and Fluid Exchange with Blood Vessels in Lymph Nodes.

Authors:  Mohammad Jafarnejad; Matthew C Woodruff; David C Zawieja; Michael C Carroll; J E Moore
Journal:  Lymphat Res Biol       Date:  2015-12       Impact factor: 2.589

Review 2.  Potassium currents in the heart: functional roles in repolarization, arrhythmia and therapeutics.

Authors:  Nipavan Chiamvimonvat; Ye Chen-Izu; Colleen E Clancy; Isabelle Deschenes; Dobromir Dobrev; Jordi Heijman; Leighton Izu; Zhilin Qu; Crystal M Ripplinger; Jamie I Vandenberg; James N Weiss; Gideon Koren; Tamas Banyasz; Eleonora Grandi; Michael C Sanguinetti; Donald M Bers; Jeanne M Nerbonne
Journal:  J Physiol       Date:  2017-01-05       Impact factor: 5.182

3.  Defining new mechanistic roles for αII spectrin in cardiac function.

Authors:  Ellen R Lubbers; Nathaniel P Murphy; Hassan Musa; Claire Yu-Mei Huang; Rohan Gupta; Morgan V Price; Mei Han; Georges Daoud; Daniel Gratz; Mona El Refaey; Xianyao Xu; Nicole K Hoeflinger; Emma L Friel; Peter Lancione; Michael J Wallace; Omer Cavus; Samantha L Simmons; Jordan L Williams; Michel Skaf; Sara N Koenig; Paul M L Janssen; Matthew N Rasband; Thomas J Hund; Peter J Mohler
Journal:  J Biol Chem       Date:  2019-05-07       Impact factor: 5.157

Review 4.  Applying Biotechnology and Bioengineering to Pediatric Lung Disease: Emerging Paradigms and Platforms.

Authors:  Kelley L Colvin; Michael E Yeager
Journal:  Front Pediatr       Date:  2015-06-09       Impact factor: 3.418

5.  A mathematical model of CO2, O2 and N2 exchange during venovenous extracorporeal membrane oxygenation.

Authors:  Christopher John Joyce; Kiran Shekar; David Andrew Cook
Journal:  Intensive Care Med Exp       Date:  2018-08-09

Review 6.  Rabbit models of cardiac mechano-electric and mechano-mechanical coupling.

Authors:  T Alexander Quinn; Peter Kohl
Journal:  Prog Biophys Mol Biol       Date:  2016-05-18       Impact factor: 3.667

7.  LongQt: A cardiac electrophysiology simulation platform.

Authors:  Birce Onal; Daniel Gratz; Thomas Hund
Journal:  MethodsX       Date:  2016-11-28

8.  A computational model to understand mouse iron physiology and disease.

Authors:  Jignesh H Parmar; Pedro Mendes
Journal:  PLoS Comput Biol       Date:  2019-01-04       Impact factor: 4.475

  8 in total

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