| Literature DB >> 25061374 |
Gonzalo Pinilla-Buitrago1, Miguel Angel Martínez-Morales2, Fernando González-García3, Paula L Enríquez4, José Luis Rangel-Salazar4, Carlos Alberto Guichard Romero5, Adolfo G Navarro-Sigüenza6, Tiberio César Monterrubio-Rico7, Griselda Escalona-Segura2.
Abstract
Cracids are among the most vulnerable groups of Neotropical birds. Almost half of the species of this family are included in a conservation risk category. Twelve taxa occur in Mexico, six of which are considered at risk at national level and two are globally endangered. Therefore, it is imperative that high quality, comprehensive, and high-resolution spatial data on the occurrence of these taxa are made available as a valuable tool in the process of defining appropriate management strategies for conservation at a local and global level. We constructed the CracidMex1 database by collating global records of all cracid taxa that occur in Mexico from available electronic databases, museum specimens, publications, "grey literature", and unpublished records. We generated a database with 23,896 clean, validated, and standardized geographic records. Database quality control was an iterative process that commenced with the consolidation and elimination of duplicate records, followed by the geo-referencing of records when necessary, and their taxonomic and geographic validation using GIS tools and expert knowledge. We followed the geo-referencing protocol proposed by the Mexican National Commission for the Use and Conservation of Biodiversity. We could not estimate the geographic coordinates of 981 records due to inconsistencies or lack of sufficient information in the description of the locality. Given that current records for most of the taxa have some degree of distributional bias, with redundancies at different spatial scales, the CracidMex1 database has allowed us to detect areas where more sampling effort is required to have a better representation of the global spatial occurrence of these cracids. We also found that particular attention needs to be given to taxa identification in those areas where congeners or conspecifics co-occur in order to avoid taxonomic uncertainty. The construction of the CracidMex1 database represents the first comprehensive research effort to compile current, available global geographic records for a group of cracids. The database can now be improved by continuous revision and addition of new records. The CracidMex1 database will provide high quality input data that could be used to generate species distribution models, to assess temporal changes in species distributions, to identify priority areas for research and conservation, and in the definition of management strategies for this bird group. This compilation exercise could be replicated for other cracid groups or regions to attain a better knowledge of the global occurrences of the species in this vulnerable bird family.Entities:
Keywords: Aves; Cracidae; Crax; Darwin Core; Mexico; Neotropic; Oreophasis; Ortalis; Penelope; Penelopina; chachalacas; curassows; geographic record; guans
Year: 2014 PMID: 25061374 PMCID: PMC4109483 DOI: 10.3897/zookeys.420.7050
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Conservation and endemic features of the cracid taxa included in the CracidMex1 database.
| Species/Subspecies | Common name | CITES | IUCN | NOM-059 | Endemicity |
|---|---|---|---|---|---|
| Plain Chachalaca | III | Least Concern | Not endemic | ||
| • E Mexico to Costa Rica | |||||
| • SE USA, E Mexico | |||||
| • Yucatan Peninsula (Mexico) | |||||
| • Utila Island (Honduras) | |||||
| • S Mexico, Guatemala, Belize | |||||
| Rufous-bellied Chachalaca | Least Concern | North western Mexico | |||
| West Mexican Chachalaca | Least Concern | Central western Mexico | |||
| White-bellied Chachalaca | Least Concern | Special protection | Northern Central America (Pacific slope) | ||
| Crested Guan | III | Least Concern | Threatened | Not endemic | |
| • Threatened | • Not endemic | ||||
| • Not endemic | |||||
| • N Colombia, N Venezuela | |||||
| Highland Guan | III | Vulnerable | Endangered | Northern Central America | |
| Horned Guan | I | Endangered | Endangered | S Mexico, Guatemala | |
| Great Curassow | III | Vulnerable | Threatened | Not endemic | |
| • Threatened | • Not endemic | ||||
| • Endangered | • Cozumel Island (Mexico) |
1 Convention on International Trade in Endangered Species of Wild Fauna and Flora
2 The IUCN Red List of Threatened Species
3 Mexican environmental legislation (SEMARNAT 2010).
4 Guatemala and Honduras.
5 Honduras.
6 Guatemala.
7Guatemala, Honduras, Costa Rica, and Colombia.
Number of records in the CracidMex1 database by genus, species, and subspecies.
| Genus/Species/Subspecies | Records | Proportion (%) |
|---|---|---|
| 17,663 | 73.9 | |
| 14,366 | 60.1 | |
| 193 | 0.8 | |
| 291 | 1.2 | |
| 119 | 0.5 | |
| 4 | 0.0 | |
| 58 | 0.2 | |
| 1,151 | 4.8 | |
| 1,754 | 7.3 | |
| 392 | 1.6 | |
| 3,100 | 13.0 | |
| 3,100 | 13.0 | |
| 1,152 | 4.8 | |
| 164 | 0.7 | |
| 29 | 0.1 | |
| 907 | 3.8 | |
| 401 | 1.7 | |
| 1,825 | 7.6 | |
| 1,825 | 7.6 | |
| 1,797 | 7.5 | |
| 28 | 0.1 |
Figure 1.Distribution of the 23,896 records by species in the CracidMex1 database.
Number of valid distributional records of cracid species by country in the CracidMex1 database.
| Country | Total | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| USA | 9,904 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9,904 |
| Mexico | 2,938 | 1,113 | 1,675 | 124 | 642 | 533 | 145 | 430 | 7,600 |
| Belize | 533 | 0 | 0 | 0 | 175 | 0 | 0 | 112 | 820 |
| Guatemala | 408 | 0 | 0 | 87 | 176 | 145 | 210 | 115 | 1,141 |
| Honduras | 134 | 0 | 0 | 0 | 33 | 42 | 0 | 16 | 225 |
| El Salvador | 1 | 0 | 0 | 78 | 10 | 29 | 0 | 10 | 128 |
| Nicaragua | 17 | 0 | 0 | 33 | 21 | 73 | 0 | 17 | 161 |
| Costa Rica | 57 | 0 | 0 | 0 | 1,410 | 0 | 0 | 769 | 2,236 |
| Panama | 0 | 0 | 0 | 0 | 141 | 0 | 0 | 59 | 200 |
| Colombia | 0 | 0 | 0 | 0 | 128 | 0 | 0 | 43 | 171 |
| Venezuela | 0 | 0 | 0 | 0 | 41 | 0 | 0 | 0 | 41 |
| Ecuador | 0 | 0 | 0 | 0 | 90 | 0 | 0 | 13 | 103 |
| Peru | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
| Total | 13,992 | 1,113 | 1,675 | 322 | 2,868 | 822 | 355 | 1,584 | 22,731 |
Figure 2.Geographic distribution of the 22,731 valid distributional records of cracids in the CracidMex1 database. Grey shadeing represents the area where the species occurrence is expected based on Ridgley et al. (2012).
Figure 3.Distribution of cracid genera by country for the 22,731 valid distributional records in the CracidMex1 database.
Figure 4.Number of cracid records gathered per year (red line) and the cumulative number of cracid records gathered from 1700 to 2013 (blue line).
Figure 5.Geographic distribution of the 22,731 valid distributional records of cracids in the CracidMex1 database. Present pattern of forest cover is depicted in green shading. Forest cover was obtained from INEGI (2012) for Mexico, the World Bank and CCAD (2000) for Central America, and the European Commission Joint Research Centre (http://www-gem.jrc.it/glc2000) for South America.
Relative contribution of records of cracid species by the different sources used in the construction of the CracidMex1 database. Numbers represent non-duplicate records. GBIF was the main source of records, but its relative contribution is magnified in this table because in the consolidation process we considered this source as the reference database.
| Source | Total | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| GBIF | 13,479 | 982 | 896 | 279 | 2,751 | 734 | 233 | 1,524 | 20,878 |
| ORNIS | 180 | 19 | 11 | 64 | 2 | 1 | 0 | 2 | 279 |
| REMIB | 86 | 0 | 0 | 0 | 0 | 0 | 0 | 12 | 98 |
| UNIBIO | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| SpeciesLink | 1 | 0 | 0 | 0 | 5 | 0 | 0 | 1 | 7 |
| IBC | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 |
| SNIB | 209 | 1 | 435 | 8 | 17 | 26 | 9 | 12 | 717 |
| Bird Atlas Mex | 120 | 95 | 31 | 1 | 57 | 34 | 2 | 51 | 391 |
| Published papers | 235 | 47 | 77 | 37 | 131 | 56 | 40 | 90 | 713 |
| “Grey literature” | 37 | 3 | 6 | 3 | 20 | 4 | 2 | 16 | 91 |
| Unpublished DB | 19 | 4 | 298 | 0 | 116 | 52 | 115 | 116 | 720 |
| Total | 14,366 | 1,151 | 1,754 | 392 | 3,100 | 907 | 401 | 1,825 | 23,896 |
Figure 6.Flowchart depicting the iterative process for the construction of the CracidMex1 database up to publication.
Definition of fields included in the CracidMex1 database based on the standard Darwin Core version 1.4.
| Field | Definition |
|---|---|
| institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record. In the case of personal records, we used the value “NA” |
| collectionCode | The name, acronym, code, or initials identifying the collection or data set from which the record was derived. If the record was not held in a collection, we used the value “NA” |
| datasetName | The name identifying the data set from which the record was derived. If the data set name was not known, we used the value “ND” |
| basisOfRecord | The specific nature of the data record. |
| occurrenceID | A uniform resource name as a unique identifier for the record. In the absence of a persistent global unique identifier, this was constructed in the form: “[institutionCode]: [collectionCode]: [catalogNumber]”. If the record lacked a value in one of these fields (NA or ND) a sequential number was assigned at the end. |
| catalogNumber | An identifier for the record within the data set or collection. If the record did not have a catalogue number, we used the value “NA” |
| recordNumber | An identifier given to the occurrence at the time it was recorded. This often serves as a link between field notes and an occurrence record, such as a specimen collector’s number. If the record did not have a record number, we used the value “NA” |
| recordedBy | A list (concatenated and separated) of names of people, groups, or organizations responsible for recording the original occurrence. The primary collector or observer, especially one who applies a personal identifier (recordNumber), is listed first. If we did not know the name of the collector, we used the value “ND” |
| individualCount | The number of individuals recorded at the time of the occurrence. We left the value empty if individualCount was unknown. |
| occurrenceStatus | A statement about the presence or absence of a taxon at a location. |
| associatedReferences | A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier) of literature associated with the occurrence. If no reference was associated, we used the value “NA” |
| year | The four-digit year in which the event occurred, according to the Common Era Calendar. If we did not know the year, we used “9999”. |
| month | The ordinal month in which the event occurred. If we did not know the month, we used “99”. |
| day | The integer day of the month on which the event occurred. If we did not know the day, we used “99”. |
| country | The name of the country or major administrative unit in which the location occurs. If we did not know the name, we used the value “ND” |
| stateProvince | The name of the next smaller administrative region below country (state, province, canton, department, region, etc.) in which the location occurs. If we did not know the name, we used the value “ND” |
| county | The full, unabbreviated name of the next smaller administrative region below stateProvince (county, shire, department, municipality) in which the location occurs. If this administrative region does not apply, we used the value “NA” |
| locality | The specific description of the place. This term may contain information modified from the original to correct perceived errors or standardize the description. If we did not know the description, we used the value “ND” |
| decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a location. Positive values are north and negative values are south of the Equator. We left the value empty if decimalLatitude was unknown. |
| decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a location. Positive values are east and negative values are west of the Greenwich Meridian. We left the value empty if decimalLongitud was unknown. |
| geodeticDatum | The ellipsoid, geodetic datum, or spatial reference system upon which the geographic coordinates given in decimalLatitude and decimalLongitude are based. We used the value “ND” |
| coordinateUncertaintyInMeters | The horizontal distance (in meters) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the entire location. We left the value empty if the uncertainty was unknown, could not be estimated, or was not applicable (because there are no coordinates). |
| georeferencedBy | A list (concatenated and separated) of names of people, groups, or organizations who determined the geo-reference for the location. |
| georeferenceProtocol | A description or reference for the methods used to determine the spatial footprint, coordinates, and uncertainties. |
| georeferenceSources | A list (concatenated and separated) of maps, gazetteers, or other resources used to geo-reference the location. |
| identifiedBy | A list (concatenated and separated) of names of people, groups, or organizations who assigned the taxon to the subject. If we did not know the name, we used the value “ND” |
| dateIdentified | The date on which the subject was identified as representing the taxon. Format yyyy-mm-dd. If we did not know the date, we used “9999”. |
| typeStatus | A list (concatenated and separated) of nomenclatural types applied to the subject. If the nomenclatural type did not apply, we used the value “NA” |
| scientificName | The full scientific name of the lowest taxonomic rank determined. |
| originalNameUsage | The taxon name, as it originally appeared when first determined. |
| kingdom | The full scientific name of the kingdom in which the taxon is classified. |
| phylum | The full scientific name of the phylum in which the taxon is classified. |
| class | The full scientific name of the class in which the taxon is classified. |
| order | The full scientific name of the order in which the taxon is classified. |
| family | The full scientific name of the family in which the taxon is classified. |
| genus | The full scientific name of the genus in which the taxon is classified. |
| specificEpithet | The name of the species epithet of the scientificName. |
| infraspecificEpithet | The name of the lowest or terminal infraspecific epithet of the scientificName. If the infraspecific epithet did not apply, we used the value “NA” |
| taxonRank | The taxonomic rank of the most specific name in the scientificName. |
| scientificNameAuthorship | The authorship information for the scientificName formatted according to the conventions. |
| taxonomicStatus | The status of the use of the scientificName as a label for a taxon. |