| Literature DB >> 25060307 |
Sylviane de Viron1, Servaas A Morré, Herman Van Oyen, Angela Brand, Sander Ouburg.
Abstract
BACKGROUND: Tobacco use disorder (TUD), defined as the use of tobacco to the detriment of a person's health or social functioning, is associated with various disorders. We hypothesized that mutual variation in genes may partly explain this link. The aims of this study were to make a non-exhaustive inventory of the disorders using (partially) the same genetic pathways as TUD, and to describe the genetic similarities between TUD and the selected disorders.Entities:
Mesh:
Year: 2014 PMID: 25060307 PMCID: PMC4119471 DOI: 10.1186/1471-2350-15-85
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1Flow of the analyses. Analysis proceeds from candidate gene selection, to candidate disorder selection, to genetic similarities between tobacco use disorder (TUD) and selected disorders. IPA, Ingenuity Pathway Analysis.
Figure 2Genetic network analyses using Ingenuity Pathway Analysis (IPA). Genetic network obtained from Ingenuity Pathway Analysis. The different shapes of nodes represent the functional class of the gene product. Edges with dashed lines show indirect interaction, while a continuous line represents direct interactions.
Figure 3Genetic network analyses using STRING. Genetic network obtained from STRING network. The STRING network incorporates the interactions of the selected genes with the highest confidence level (level of 0.900). Stronger associations are represented by thicker lines.
Genes associated to tobacco use disorder selected from Gene2Mesh and Ingenuity
| Nicotinic receptor | X | | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | X | X | |
| Nicotinic receptor | X | X | |
| Nicotinic receptor | X | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Nicotinic receptor | | X | |
| Dopamine | X | | |
| Nicotine metabolism | X | | |
| Dopamine | X | X | |
| Dopamine | X | | |
| GABA | | X | |
| GABA | X | | |
| GABA | X | | |
| Neurexin | | X | |
| Opioid receptor | | X | |
| Opioid receptor | | X | |
| Opioid receptor | | X | |
| Non-opioid receptor | | X | |
| Dopamine | X | X | |
| Serotonin | X | X | |
| Serotonin | X |
Selected genes are represented by X; GABA, Gamma-aminobutyric acid.
Disorders associated to genes influencing tobacco use disorder selected from methods 1 and 2
| Addiction | X | X |
| Alcoholism | X | X |
| Bladder cancer | X | X |
| Cervical cancer | | X |
| Coronary disease | X | X |
| Delirium | X | |
| Depressive disorder | X | X |
| Dyskinesia | X | |
| Gastric cancer | X | X |
| Gastrointestinal tract cancer | | X |
| Hypertension | | X |
| Insomnia | X | |
| Leukaemia | | X |
| Liver cancer | | X |
| Malignant hypertension | X | X |
| Mood disorders | X | |
| Movement disorders | X | |
| Motor dysfunction | X | X |
| Oesophageal cancer | X | X |
| Pancreatic cancer | | X |
| Psychomotor agitation | X | X |
| Schizophrenia | X | X |
| Schizoaffective disorder | X | X |
| Stroke | X | X |
| Subarachnoid haemorrhage | X | |
| Vascular disorder | X | X |
Method 1, 20 disorders with the strongest p-value indicating the relationship with the selected genes using Ingenuity Pathway Analysis; Method 2, based on category of disorders and developed in two steps: Firstly selection of the five disorders with the strongest p-value for each category and secondly limitation to the 20 disorders with the strongest p-value; Final selected disorders are the one retrieved from both method 1 and method 2.
Jaccard distance between pairs of disorders associated to genes influencing tobacco use disorder
| Alcoholism | | | | | | | | | | | | | | |
| Bladder cancer | 0.448 | 0.360 | | | | | | | | | | | | |
| Coronary disorder | 0.367 | | | | | | | | | | | | ||
| Depressive disorder | 0.407 | | | | | | | | | | | |||
| Gastric cancer | 0.370 | 0.414 | | | | | | | | | | |||
| Malignant hypertension | 0.448 | 0.360 | 0.407 | | | | | | | | | |||
| Motor dysfunction | | | | | | | | |||||||
| Oesophageal cancer | 0.448 | 0.360 | 0.407 | | | | | | | |||||
| Psychomotor agitation | 0.379 | | | | | | ||||||||
| Schizoaffective disorder | 0.360 | 0.370 | 0.360 | 0.360 | | | | | ||||||
| Schizophrenia | 0.429 | 0.433 | 0.429 | 0.429 | 0.357 | | | | ||||||
| Stroke | 0.091 | | | |||||||||||
| Tobacco use disorder | 0.384 | 0.413 | 0.385 | 0.384 | 0.370 | 0.345 | | |||||||
| Vascular disorder | 0.360 | 0.370 | 0.360 | 0.360 | 0.355 |
Colours representing the genetic similarities between disorders: bold = strong similarities (<0.15); italic = middle similarities (0.15-0.35); normal = low similarities (>0.35).
Figure 4Dendrogram of disorders associated to the same genes as tobacco use disorder resulting from centroid hierarchical cluster analysis, using the Jaccard distance obtained from 32 genes.