Literature DB >> 25059657

Harnessing the unique structural properties of isolated α-helices.

Carter J Swanson1, Sivaraj Sivaramakrishnan2.   

Abstract

The α-helix is a ubiquitous secondary structural element that is almost exclusively observed in proteins when stabilized by tertiary or quaternary interactions. However, beginning with the unexpected observations of α-helix formation in the isolated C-peptide in ribonuclease A, there is growing evidence that a significant percentage (0.2%) of all proteins contain isolated stable single α-helical domains (SAH). These SAH domains provide unique structural features essential for normal protein function. A subset of SAH domains contain a characteristic ER/K motif, composed of a repeating sequence of ∼4 consecutive glutamic acids followed by ∼4 consecutive basic arginine or lysine (R/K) residues. The ER/K α-helix, also termed the ER/K linker, has been extensively characterized in the context of the myosin family of molecular motors and is emerging as a versatile structural element for protein and cellular engineering applications. Here, we review the structure and function of SAH domains, as well as the tools to identify them in natural proteins. We conclude with a discussion of recent studies that have successfully used the modular ER/K linker for engineering chimeric myosin proteins with altered mechanical properties, as well as synthetic polypeptides that can be used to monitor and systematically modulate protein interactions within cells.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Biosensor; Coiled-coil; ER/K Alpha-Helix; ER/K Linker; Fluorescence Resonance Energy Transfer (FRET); Myosin; Protein Structure; Protein-Protein Interaction; Single Alpha-helical Domain (SAH)

Mesh:

Substances:

Year:  2014        PMID: 25059657      PMCID: PMC4162150          DOI: 10.1074/jbc.R114.583906

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

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Journal:  J Mol Biol       Date:  2005-10-21       Impact factor: 5.469

4.  Conformations of variably linked chimeric proteins evaluated by synchrotron X-ray small-angle scattering.

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Journal:  Proteins       Date:  2004-12-01

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Authors:  A J Doig; R L Baldwin
Journal:  Protein Sci       Date:  1995-07       Impact factor: 6.725

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Journal:  J Mol Biol       Date:  1997-08-01       Impact factor: 5.469

7.  A flexible domain is essential for the large step size and processivity of myosin VI.

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Journal:  Mol Cell       Date:  2005-02-18       Impact factor: 17.970

8.  Optimizing the stability of single-chain proteins by linker length and composition mutagenesis.

Authors:  C R Robinson; R T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

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Authors:  P C Lyu; P J Gans; N R Kallenbach
Journal:  J Mol Biol       Date:  1992-01-05       Impact factor: 5.469

10.  Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein.

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Journal:  EMBO J       Date:  1994-01-01       Impact factor: 11.598

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  30 in total

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Authors:  Jung-Hwa Cho; Carter J Swanson; Jeannie Chen; Ang Li; Lisa G Lippert; Shannon E Boye; Kasey Rose; Sivaraj Sivaramakrishnan; Cheng-Ming Chuong; Robert H Chow
Journal:  ACS Chem Biol       Date:  2017-03-01       Impact factor: 5.100

2.  The Role of Regulatory Domains in Maintaining Autoinhibition in the Multidomain Kinase PKCα.

Authors:  Ruth F Sommese; Michael Ritt; Carter J Swanson; Sivaraj Sivaramakrishnan
Journal:  J Biol Chem       Date:  2017-01-03       Impact factor: 5.157

3.  Intracellular cargo transport by single-headed kinesin motors.

Authors:  Kristin I Schimert; Breane G Budaitis; Dana N Reinemann; Matthew J Lang; Kristen J Verhey
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-08       Impact factor: 11.205

4.  Revealing the Activity of Trimeric G-proteins in Live Cells with a Versatile Biosensor Design.

Authors:  Marcin Maziarz; Jong-Chan Park; Anthony Leyme; Arthur Marivin; Alberto Garcia-Lopez; Prachi P Patel; Mikel Garcia-Marcos
Journal:  Cell       Date:  2020-07-06       Impact factor: 41.582

5.  RIM-binding protein couples synaptic vesicle recruitment to release sites.

Authors:  Astrid G Petzoldt; Torsten W B Götz; Jan Heiner Driller; Janine Lützkendorf; Suneel Reddy-Alla; Tanja Matkovic-Rachid; Sunbin Liu; Elena Knoche; Sara Mertel; Vladimir Ugorets; Martin Lehmann; Niraja Ramesh; Christine Brigitte Beuschel; Benno Kuropka; Christian Freund; Ulrich Stelzl; Bernhard Loll; Fan Liu; Markus C Wahl; Stephan J Sigrist
Journal:  J Cell Biol       Date:  2020-07-06       Impact factor: 10.539

6.  Priming GPCR signaling through the synergistic effect of two G proteins.

Authors:  Tejas M Gupte; Rabia U Malik; Ruth F Sommese; Michael Ritt; Sivaraj Sivaramakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-21       Impact factor: 11.205

7.  β2-adrenoceptor ligand efficacy is tuned by a two-stage interaction with the Gαs C terminus.

Authors:  Keehun Kim; Shayla Paulekas; Fredrik Sadler; Tejas M Gupte; Michael Ritt; Matthew Dysthe; Nagarajan Vaidehi; Sivaraj Sivaramakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 11.205

8.  Correlation between Activity and Domain Complementation in Adenylyl Cyclase Demonstrated with a Novel Fluorescence Resonance Energy Transfer Sensor.

Authors:  Michael Ritt; Sivaraj Sivaramakrishnan
Journal:  Mol Pharmacol       Date:  2016-01-22       Impact factor: 4.436

9.  Modulating the Stiffness of the Myosin VI Single α-Helical Domain.

Authors:  C Ashley Barnes; Yang Shen; Jinfa Ying; Ad Bax
Journal:  Biophys J       Date:  2020-01-15       Impact factor: 4.033

10.  Bitopic Inhibition of ATP and Substrate Binding in Ser/Thr Kinases through a Conserved Allosteric Mechanism.

Authors:  Ning Ma; Lisa G Lippert; Titu Devamani; Benjamin Levy; Sangbae Lee; Manbir Sandhu; Nagarajan Vaidehi; Sivaraj Sivaramakrishnan
Journal:  Biochemistry       Date:  2018-10-30       Impact factor: 3.162

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