Literature DB >> 25059426

Global sensitivity analysis used to interpret biological experimental results.

Angela M Jarrett1, Yaning Liu, N G Cogan, M Yousuff Hussaini.   

Abstract

Modeling host/pathogen interactions provides insight into immune defects that allow bacteria to overwhelm the host, mechanisms that allow vaccine strategies to be successful, and illusive interactions between immune components that govern the immune response to a challenge. However, even simplified models require a fairly high dimensional parameter space to be explored. Here we use global sensitivity analysis for parameters in a simple model for biofilm infections in mice. The results indicate which parameters are insignificant and are 'frozen' to yield a reduced model. The reduced model replicates the full model with high accuracy, using approximately half of the parameter space. We used the sensitivity to investigate the results of the combined biological and mathematical experiments for osteomyelitis. We are able to identify parts of the compartmentalized immune system that were responsible for each of the experimental outcomes. This model is one example for a technique that can be used generally.

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Year:  2014        PMID: 25059426     DOI: 10.1007/s00285-014-0818-3

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  38 in total

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Journal:  N Engl J Med       Date:  2000-07-06       Impact factor: 91.245

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3.  Platelets suppress Treg recruitment.

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Journal:  Blood       Date:  2010-11-18       Impact factor: 22.113

4.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
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5.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

6.  Murine immune response to a chronic Staphylococcus aureus biofilm infection.

Authors:  Ranjani Prabhakara; Janette M Harro; Jeff G Leid; Megan Harris; Mark E Shirtliff
Journal:  Infect Immun       Date:  2011-01-31       Impact factor: 3.441

7.  Identification of Staphylococcus aureus proteins recognized by the antibody-mediated immune response to a biofilm infection.

Authors:  Rebecca A Brady; Jeff G Leid; Anne K Camper; J William Costerton; Mark E Shirtliff
Journal:  Infect Immun       Date:  2006-06       Impact factor: 3.441

8.  General model of inflammation.

Authors:  Meagan C Herald
Journal:  Bull Math Biol       Date:  2009-10-23       Impact factor: 1.758

9.  The human immune response to Mycobacterium tuberculosis in lung and lymph node.

Authors:  Simeone Marino; Denise E Kirschner
Journal:  J Theor Biol       Date:  2004-04-21       Impact factor: 2.691

10.  The pinocytic rate of activated macrophages.

Authors:  P J Edelson; R Zwiebel; Z A Cohn
Journal:  J Exp Med       Date:  1975-11-01       Impact factor: 14.307

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  4 in total

Review 1.  Mechanism-Based Modeling of Tumor Growth and Treatment Response Constrained by Multiparametric Imaging Data.

Authors:  David A Hormuth; Angela M Jarrett; Ernesto A B F Lima; Matthew T McKenna; David T Fuentes; Thomas E Yankeelov
Journal:  JCO Clin Cancer Inform       Date:  2019-02

Review 2.  Mathematical models of tumor cell proliferation: A review of the literature.

Authors:  Angela M Jarrett; Ernesto A B F Lima; David A Hormuth; Matthew T McKenna; Xinzeng Feng; David A Ekrut; Anna Claudia M Resende; Amy Brock; Thomas E Yankeelov
Journal:  Expert Rev Anticancer Ther       Date:  2018-10-22       Impact factor: 4.512

3.  Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos.

Authors:  Gregory D McCarthy; Robert A Drewell; Jacqueline M Dresch
Journal:  PeerJ       Date:  2015-06-18       Impact factor: 2.984

4.  Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer.

Authors:  Kaitlyn E Johnson; Grant R Howard; Daylin Morgan; Eric A Brenner; Andrea L Gardner; Russell E Durrett; William Mo; Aziz Al'Khafaji; Eduardo D Sontag; Angela M Jarrett; Thomas E Yankeelov; Amy Brock
Journal:  Phys Biol       Date:  2020-11-20       Impact factor: 2.583

  4 in total

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