Literature DB >> 25058642

In situ simultaneous monitoring of ATP and GTP using a graphene oxide nanosheet-based sensing platform in living cells.

Ying Wang1, Longhua Tang1, Zhaohui Li2, Yuehe Lin3, Jinghong Li1.   

Abstract

Here we present a detailed protocol for in situ multiple fluorescence monitoring of adenosine-5'-triphosphate (ATP) and guanosine-5'-triphosphate (GTP) in MCF-7 breast cancer cells by using graphene oxide nanosheet (GO-nS) and DNA/RNA aptamers. FAM-labeled ATP aptamer and Cy5-modified GTP aptamer are used to construct the multiple aptamer/GO-nS sensing platform through 'π-π stacking' between aptamers and GO-nS. Binding of aptamers to GO-nS guarantees the fluorescence resonance energy transfer between fluorophores and GO-nS, resulting in 'fluorescence off'. When the aptamer/GO-nS are transported inside the cells via endocytosis, the conformation of the aptamers will change on interaction with cellular ATP and GTP. On the basis of the fluorescence 'off/on' switching, simultaneous sensing and imaging of ATP and GTP in vitro and in situ have been realized through fluorescence and confocal microscopy techniques. In this protocol, we describe the synthesis of GO and GO-nS, preparation of aptamer/GO-nS platform, in vitro detection of ATP and GTP, and how to use this platform to realize intracellular ATP and GTP imaging in cultured MCF-7 cells. The preparation of GO-nS is anticipated to take 7-14 d, and assays involving microscopy imaging and MCF-7 cells culturing can be performed in 2-3 d.

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Year:  2014        PMID: 25058642     DOI: 10.1038/nprot.2014.126

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  47 in total

1.  Differential receptors create patterns diagnostic for ATP and GTP.

Authors:  Shawn C McCleskey; Michael J Griffin; Stephen E Schneider; John T McDevitt; Eric V Anslyn
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

2.  Structure-switching signaling aptamers.

Authors:  Razvan Nutiu; Yingfu Li
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

3.  Solution structure of an informationally complex high-affinity RNA aptamer to GTP.

Authors:  James M Carothers; Jonathan H Davis; James J Chou; Jack W Szostak
Journal:  RNA       Date:  2006-02-28       Impact factor: 4.942

Review 4.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

5.  Combinatorial synthesis of benzimidazolium dyes and its diversity directed application toward GTP-selective fluorescent chemosensors.

Authors:  Shenliang Wang; Young-Tae Chang
Journal:  J Am Chem Soc       Date:  2006-08-16       Impact factor: 15.419

6.  A supramolecular ON-OFF-ON fluorescence assay for selective recognition of GTP.

Authors:  Prakash P Neelakandan; Mahesh Hariharan; Danaboyina Ramaiah
Journal:  J Am Chem Soc       Date:  2006-09-06       Impact factor: 15.419

7.  In situ live cell sensing of multiple nucleotides exploiting DNA/RNA aptamers and graphene oxide nanosheets.

Authors:  Ying Wang; Zhaohui Li; Thomas J Weber; Dehong Hu; Chiann-Tso Lin; Jinghong Li; Yuehe Lin
Journal:  Anal Chem       Date:  2013-06-24       Impact factor: 6.986

8.  Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators.

Authors:  Hiromi Imamura; Kim P Huynh Nhat; Hiroko Togawa; Kenta Saito; Ryota Iino; Yasuyuki Kato-Yamada; Takeharu Nagai; Hiroyuki Noji
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-31       Impact factor: 11.205

Review 9.  Graphene and graphene oxide: biofunctionalization and applications in biotechnology.

Authors:  Ying Wang; Zhaohui Li; Jun Wang; Jinghong Li; Yuehe Lin
Journal:  Trends Biotechnol       Date:  2011-03-10       Impact factor: 19.536

10.  A genetically encoded fluorescent reporter of ATP:ADP ratio.

Authors:  Jim Berg; Yin Pun Hung; Gary Yellen
Journal:  Nat Methods       Date:  2009-01-04       Impact factor: 28.547

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  30 in total

Review 1.  Imaging Adenosine Triphosphate (ATP).

Authors:  Megha Rajendran; Eric Dane; Jason Conley; Mathew Tantama
Journal:  Biol Bull       Date:  2016-08       Impact factor: 1.818

Review 2.  Graphene/aptamer probes for small molecule detection: from in vitro test to in situ imaging.

Authors:  Yi Dong; Ting Zhang; Xiaoya Lin; Jiangtao Feng; Fang Luo; Hong Gao; Yangping Wu; Ruijie Deng; Qiang He
Journal:  Mikrochim Acta       Date:  2020-02-19       Impact factor: 5.833

Review 3.  Nanoscale zero-valent metals: a review of synthesis, characterization, and applications to environmental remediation.

Authors:  Lingyun Li; Jiwei Hu; Xuedan Shi; Mingyi Fan; Jin Luo; Xionghui Wei
Journal:  Environ Sci Pollut Res Int       Date:  2016-04-20       Impact factor: 4.223

4.  Ultrasensitive electrochemiluminescence immunosensor for the transcriptional co-activator p300 by using a graphene oxide monolayer and tetrahedral DNA-mediated signal amplification.

Authors:  Yufang Hu; Qingqing Zhang; Dandan Hu; Jiao Wang; Jiajia Rao; Lihua Xu; Zhiyong Guo; Sui Wang; Xin Liu; Shiyun Tang; Qinpeng Shen
Journal:  Mikrochim Acta       Date:  2019-05-02       Impact factor: 5.833

5.  Colorimetric and fluorometric dual-channel ratiometric determination of fungicide cymoxanil based on analyte-induced aggregation of silver nanoparticles and dually emitting carbon dots.

Authors:  Xiaowen Jiang; Hui Jin; Yujiao Sun; Rijun Gui
Journal:  Mikrochim Acta       Date:  2019-07-27       Impact factor: 5.833

6.  New insights into a classic aptamer: binding sites, cooperativity and more sensitive adenosine detection.

Authors:  Zijie Zhang; Olatunji Oni; Juewen Liu
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

Review 7.  Nucleic-Acid Structures as Intracellular Probes for Live Cells.

Authors:  Devleena Samanta; Sasha B Ebrahimi; Chad A Mirkin
Journal:  Adv Mater       Date:  2019-07-04       Impact factor: 30.849

8.  Single-Cell Mechanical Characteristics Analyzed by Multiconstriction Microfluidic Channels.

Authors:  Xiang Ren; Parham Ghassemi; Hesam Babahosseini; Jeannine S Strobl; Masoud Agah
Journal:  ACS Sens       Date:  2017-02-10       Impact factor: 7.711

9.  A combinatorial approach to the repertoire of RNA kissing motifs; towards multiplex detection by switching hairpin aptamers.

Authors:  Guillaume Durand; Eric Dausse; Emma Goux; Emmanuelle Fiore; Eric Peyrin; Corinne Ravelet; Jean-Jacques Toulmé
Journal:  Nucleic Acids Res       Date:  2016-04-11       Impact factor: 16.971

10.  Fluorometric determination of Vibrio parahaemolyticus using an F0F1-ATPase-based aptamer and labeled chromatophores.

Authors:  Nuo Duan; Shijia Wu; Huiling Zhang; Ying Zou; Zhouping Wang
Journal:  Mikrochim Acta       Date:  2018-05-18       Impact factor: 5.833

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