Literature DB >> 25056324

Using crude whole-genome assemblies of Neisseria gonorrhoeae as a platform for strain analysis: clonal spread of gonorrhea infection in Saskatchewan, Canada.

Sinisa Vidovic1, Carolyn Caron2, Ali Taheri3, Sidharath D Thakur4, Timothy D Read5, Anthony Kusalik2, Jo-Anne R Dillon6.   

Abstract

Using crude whole-genome assemblies, we analyzed 25 isolates of Neisseria gonorrhoeae by using a high-resolution single nucleotide polymorphism (SNP) approach for nine housekeeping genes, characterizing penA alleles, and antimicrobial susceptibility phenotypes coupled with population structure analysis. Two clonal complexes, characterized by their spatial and geographical persistence, were identified. In addition, the clonal spread of penicillin-resistant/intermediate phenotypes and a novel introduction of the azithromycin resistance phenotype in Saskatchewan, Canada, were ascertained using this method.
Copyright © 2014, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID： 25056324      PMCID： PMC4187769          DOI： 10.1128/JCM.01502-14

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  26 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

Review 2.  Antibiotic resistance in Neisseria gonorrhoeae is diminishing available treatment options for gonorrhea: some possible remedies.

Authors:  John Tapsall
Journal:  Expert Rev Anti Infect Ther       Date:  2006-08       Impact factor: 5.091

3.  CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.

Authors:  Mattias Jakobsson; Noah A Rosenberg
Journal:  Bioinformatics       Date:  2007-05-07       Impact factor: 6.937

4.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

5.  Identification of networks of sexually transmitted infection: a molecular, geographic, and social network analysis.

Authors:  John L Wylie; Teresa Cabral; Ann M Jolly
Journal:  J Infect Dis       Date:  2005-02-14       Impact factor: 5.226

6.  A novel 4.9-kilobase plasmid associated with an outbreak of penicillinase-producing Neisseria gonorrhoeae.

Authors:  K H Yeung; J R Dillon; M Pauzé; E Wallace
Journal:  J Infect Dis       Date:  1986-06       Impact factor: 5.226

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Patterns of chlamydia and gonorrhea infection in sexual networks in Manitoba, Canada.

Authors:  J L Wylie; A Jolly
Journal:  Sex Transm Dis       Date:  2001-01       Impact factor: 2.830

9.  Diversity of penA alterations and subtypes in Neisseria gonorrhoeae strains from Sydney, Australia, that are less susceptible to ceftriaxone.

Authors:  David M Whiley; E Athena Limnios; Sanghamitra Ray; Theo P Sloots; John W Tapsall
Journal:  Antimicrob Agents Chemother       Date:  2007-06-25       Impact factor: 5.191

10.  Unique combined penA/mtrR/porB mutations and NG-MAST strain types associated with ceftriaxone and cefixime MIC increases in a 'susceptible' Neisseria gonorrhoeae population.

Authors:  S D Thakur; S Starnino; G B Horsman; P N Levett; J R Dillon
Journal:  J Antimicrob Chemother       Date:  2014-02-13       Impact factor: 5.790
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  16 in total

1.  Multiplex Real-Time PCR Assay for Simultaneous Identification of Neisseria gonorrhoeae and Its Ciprofloxacin Susceptibility Status.

Authors:  Sumudu R Perera; Nurul H Khan; Irene Martin; Ali Taheri; Rajinder P Parti; Paul N Levett; Greg B Horsman; Anthony Kusalik; Jo-Anne R Dillon
Journal:  J Clin Microbiol       Date:  2017-08-16       Impact factor: 5.948

2.  Genomic Analysis Reveals Antibiotic-Susceptible Clones and Emerging Resistance in Neisseria gonorrhoeae in Saskatchewan, Canada.

Authors:  Nidhi R Parmar; Reema Singh; Irene Martin; Sumudu R Perera; Walter Demczuk; Anthony Kusalik; Jessica Minion; Jo-Anne R Dillon
Journal:  Antimicrob Agents Chemother       Date:  2020-08-20       Impact factor: 5.191

Review 3.  Applications of genomics to slow the spread of multidrug-resistant Neisseria gonorrhoeae.

Authors:  Tatum D Mortimer; Yonatan H Grad
Journal:  Ann N Y Acad Sci       Date:  2018-06-06       Impact factor: 5.691

4.  Whole-genome phylogenomic heterogeneity of Neisseria gonorrhoeae isolates with decreased cephalosporin susceptibility collected in Canada between 1989 and 2013.

Authors:  Walter Demczuk; Tarah Lynch; Irene Martin; Gary Van Domselaar; Morag Graham; Amrita Bharat; Vanessa Allen; Linda Hoang; Brigitte Lefebvre; Greg Tyrrell; Greg Horsman; David Haldane; Richard Garceau; John Wylie; Tom Wong; Michael R Mulvey
Journal:  J Clin Microbiol       Date:  2014-11-05       Impact factor: 5.948

Review 5.  Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea.

Authors:  A Jeanine Abrams; David L Trees
Journal:  Pathog Dis       Date:  2017-06-01       Impact factor: 3.166

6.  Evidence of Recent Genomic Evolution in Gonococcal Strains With Decreased Susceptibility to Cephalosporins or Azithromycin in the United States, 2014-2016.

Authors:  Jesse C Thomas; Sandra Seby; A Jeanine Abrams; Jack Cartee; Sean Lucking; Eshaw Vidyaprakash; Matthew Schmerer; Cau D Pham; Jaeyoung Hong; Elizabeth Torrone; Sancta St Cyr; William M Shafer; Kyle Bernstein; Ellen N Kersh; Kim M Gernert
Journal:  J Infect Dis       Date:  2019-06-19       Impact factor: 5.226

Review 7.  Whole-genome sequencing targets drug-resistant bacterial infections.

Authors:  N V Punina; N M Makridakis; M A Remnev; A F Topunov
Journal:  Hum Genomics       Date:  2015-08-05       Impact factor: 4.639

8.  Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance.

Authors:  Matthew N Ezewudo; Sandeep J Joseph; Santiago Castillo-Ramirez; Deborah Dean; Carlos Del Rio; Xavier Didelot; Jo-Anne Dillon; Richard F Selden; William M Shafer; Rosemary S Turingan; Magnus Unemo; Timothy D Read
Journal:  PeerJ       Date:  2015-03-05       Impact factor: 2.984

Review 9.  Bioinformatics tools used for whole-genome sequencing analysis of Neisseria gonorrhoeae: a literature review.

Authors:  Reema Singh; Anthony Kusalik; Jo-Anne R Dillon
Journal:  Brief Funct Genomics       Date:  2022-04-11       Impact factor: 4.840

10.  Genomic analyses of Neisseria gonorrhoeae reveal an association of the gonococcal genetic island with antimicrobial resistance.

Authors:  Odile B Harrison; Marianne Clemence; Joseph P Dillard; Christoph M Tang; David Trees; Yonatan H Grad; Martin C J Maiden
Journal:  J Infect       Date:  2016-08-26       Impact factor: 6.072
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