Literature DB >> 25055788

Designing libraries of chimeric proteins using SCHEMA recombination and RASPP.

Matthew A Smith1, Frances H Arnold.   

Abstract

SCHEMA is a method for designing libraries of novel proteins by recombination of homologous sequences. The goal is to maximize the number of folded proteins while simultaneously generating significant sequence diversity. Here, we use the RASPP algorithm to identify optimal SCHEMA designs for shuffling contiguous elements of sequence. To exemplify the method, SCHEMA is used to recombine five fungal cellobiohydrolases (CBH1s) to produce a library of more than 390,000 novel CBH1 sequences.

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Year:  2014        PMID: 25055788     DOI: 10.1007/978-1-4939-1053-3_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

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Review 4.  Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

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  4 in total

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