Literature DB >> 25044351

Emerging approaches in predictive toxicology.

Luoping Zhang1, Cliona M McHale, Nigel Greene, Ronald D Snyder, Ivan N Rich, Marilyn J Aardema, Shambhu Roy, Stefan Pfuhler, Sundaresan Venkatactahalam.   

Abstract

Predictive toxicology plays an important role in the assessment of toxicity of chemicals and the drug development process. While there are several well-established in vitro and in vivo assays that are suitable for predictive toxicology, recent advances in high-throughput analytical technologies and model systems are expected to have a major impact on the field of predictive toxicology. This commentary provides an overview of the state of the current science and a brief discussion on future perspectives for the field of predictive toxicology for human toxicity. Computational models for predictive toxicology, needs for further refinement and obstacles to expand computational models to include additional classes of chemical compounds are highlighted. Functional and comparative genomics approaches in predictive toxicology are discussed with an emphasis on successful utilization of recently developed model systems for high-throughput analysis. The advantages of three-dimensional model systems and stem cells and their use in predictive toxicology testing are also described.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  genotoxicity; in silico approaches; model systems; predictive toxicology

Mesh:

Year:  2014        PMID: 25044351      PMCID: PMC4749138          DOI: 10.1002/em.21885

Source DB:  PubMed          Journal:  Environ Mol Mutagen        ISSN: 0893-6692            Impact factor:   3.216


  58 in total

Review 1.  Assaying embryotoxicity in the test tube: current limitations of the embryonic stem cell test (EST) challenging its applicability domain.

Authors:  Christian Riebeling; Katrin Hayess; Annelieke K Peters; Margino Steemans; Horst Spielmann; Andreas Luch; Andrea E M Seiler
Journal:  Crit Rev Toxicol       Date:  2012-05       Impact factor: 5.635

Review 2.  Assessment of atypical DNA intercalating agents in biological and in silico systems.

Authors:  Ronald D Snyder
Journal:  Mutat Res       Date:  2007-03-12       Impact factor: 2.433

3.  In vitro to in vivo concordance of a high throughput assay of bone marrow toxicity across a diverse set of drug candidates.

Authors:  Andrew J Olaharski; Hirdesh Uppal; Matthew Cooper; Stefan Platz; Tanja S Zabka; Kyle L Kolaja
Journal:  Toxicol Lett       Date:  2009-03-25       Impact factor: 4.372

4.  Androgenetic haploid embryonic stem cells produce live transgenic mice.

Authors:  Wei Li; Ling Shuai; Haifeng Wan; Mingzhu Dong; Meng Wang; Lisi Sang; Chunjing Feng; Guan-Zheng Luo; Tianda Li; Xin Li; Libin Wang; Qin-Yuan Zheng; Chao Sheng; Hua-Jun Wu; Zhonghua Liu; Lei Liu; Liu Wang; Xiu-Jie Wang; Xiao-Yang Zhao; Qi Zhou
Journal:  Nature       Date:  2012-09-30       Impact factor: 49.962

5.  Acetylated H4K16 by MYST1 protects UROtsa cells from arsenic toxicity and is decreased following chronic arsenic exposure.

Authors:  William Jaime Jo; Xuefeng Ren; Feixia Chu; Maria Aleshin; Henri Wintz; Alma Burlingame; Martyn Thomas Smith; Chris Dillon Vulpe; Luoping Zhang
Journal:  Toxicol Appl Pharmacol       Date:  2009-09-02       Impact factor: 4.219

Review 6.  Strategies and new developments in the generation of patient-specific pluripotent stem cells.

Authors:  Shinya Yamanaka
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

7.  Large-scale evaluation of candidate genes identifies associations between DNA repair and genomic maintenance and development of benzene hematotoxicity.

Authors:  Qing Lan; Luoping Zhang; Min Shen; William J Jo; Roel Vermeulen; Guilan Li; Christopher Vulpe; Sophia Lim; Xuefeng Ren; Stephen M Rappaport; Sonja I Berndt; Meredith Yeager; Jeff Yuenger; Richard B Hayes; Martha Linet; Songnian Yin; Stephen Chanock; Martyn T Smith; Nathaniel Rothman
Journal:  Carcinogenesis       Date:  2008-10-31       Impact factor: 4.944

8.  Werner syndrome protein, WRN, protects cells from DNA damage induced by the benzene metabolite hydroquinone.

Authors:  Xuefeng Ren; Sophia Lim; Martyn T Smith; Luoping Zhang
Journal:  Toxicol Sci       Date:  2008-12-08       Impact factor: 4.849

9.  Modulation of the genotoxicity of bleomycin by amines through noncovalent DNA interactions and alteration of physiological conditions in yeast.

Authors:  George R Hoffmann; Gabrielle S Gessner; Jennifer F Hughes; Matthew V Ronan; Katelyn E Sylvia; Christine J Willett
Journal:  Mutat Res       Date:  2007-03-02       Impact factor: 2.433

10.  Modulation of Ras signaling alters the toxicity of hydroquinone, a benzene metabolite and component of cigarette smoke.

Authors:  Matthew North; Joe Shuga; Michele Fromowitz; Alexandre Loguinov; Kevin Shannon; Luoping Zhang; Martyn T Smith; Chris D Vulpe
Journal:  BMC Cancer       Date:  2014-01-05       Impact factor: 4.430

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  7 in total

Review 1.  A New Chapter for Mesenchymal Stem Cells: Decellularized Extracellular Matrices.

Authors:  Yagiz Anasiz; Riza Koksal Ozgul; Duygu Uckan-Cetinkaya
Journal:  Stem Cell Rev Rep       Date:  2017-10       Impact factor: 5.739

2.  Intersection of toxicogenomics and high throughput screening in the Tox21 program: an NIEHS perspective.

Authors:  B Alex Merrick; Richard S Paules; Raymond R Tice
Journal:  Int J Biotechnol       Date:  2015

3.  Evaluation of Pb concentrations in selected vegetables and portable drinking water, and intelligent quotients of school children in Ishiagu-a Pb mining community: health risk assessment using predictive modelling.

Authors:  Ibiwari C Dike; Chimezie N Onwurah; Uche Uzodinma; Ikechukwu N Onwurah
Journal:  Environ Monit Assess       Date:  2020-01-20       Impact factor: 2.513

4.  Identification of Genes That Modulate Susceptibility to Formaldehyde and Imatinib by Functional Genomic Screening in Human Haploid KBM7 Cells.

Authors:  Hua Shen; Cliona M McHale; Syed I Haider; Cham Jung; Susie Zhang; Martyn T Smith; Luoping Zhang
Journal:  Toxicol Sci       Date:  2016-03-22       Impact factor: 4.849

5.  Large-Scale Modeling of Multispecies Acute Toxicity End Points Using Consensus of Multitask Deep Learning Methods.

Authors:  Sankalp Jain; Vishal B Siramshetty; Vinicius M Alves; Eugene N Muratov; Nicole Kleinstreuer; Alexander Tropsha; Marc C Nicklaus; Anton Simeonov; Alexey V Zakharov
Journal:  J Chem Inf Model       Date:  2021-02-03       Impact factor: 4.956

Review 6.  The Next Generation of Risk Assessment Multi-Year Study-Highlights of Findings, Applications to Risk Assessment, and Future Directions.

Authors:  Ila Cote; Melvin E Andersen; Gerald T Ankley; Stanley Barone; Linda S Birnbaum; Kim Boekelheide; Frederic Y Bois; Lyle D Burgoon; Weihsueh A Chiu; Douglas Crawford-Brown; Kevin M Crofton; Michael DeVito; Robert B Devlin; Stephen W Edwards; Kathryn Z Guyton; Dale Hattis; Richard S Judson; Derek Knight; Daniel Krewski; Jason Lambert; Elizabeth Anne Maull; Donna Mendrick; Gregory M Paoli; Chirag Jagdish Patel; Edward J Perkins; Gerald Poje; Christopher J Portier; Ivan Rusyn; Paul A Schulte; Anton Simeonov; Martyn T Smith; Kristina A Thayer; Russell S Thomas; Reuben Thomas; Raymond R Tice; John J Vandenberg; Daniel L Villeneuve; Scott Wesselkamper; Maurice Whelan; Christine Whittaker; Ronald White; Menghang Xia; Carole Yauk; Lauren Zeise; Jay Zhao; Robert S DeWoskin
Journal:  Environ Health Perspect       Date:  2016-04-19       Impact factor: 9.031

7.  ProTox-II: a webserver for the prediction of toxicity of chemicals.

Authors:  Priyanka Banerjee; Andreas O Eckert; Anna K Schrey; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

  7 in total

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