Literature DB >> 25040013

Identifying mouse models for skin cancer using the Mouse Tumor Biology Database.

Dale A Begley1, Debra M Krupke, Steven B Neuhauser, Joel E Richardson, Paul N Schofield, Carol J Bult, Janan T Eppig, John P Sundberg.   

Abstract

In recent years, the scientific community has generated an ever-increasing amount of data from a growing number of animal models of human cancers. Much of these data come from genetically engineered mouse models. Identifying appropriate models for skin cancer and related relevant genetic data sets from an expanding pool of widely disseminated data can be a daunting task. The Mouse Tumor Biology Database (MTB) provides an electronic archive, search and analysis system that can be used to identify dermatological mouse models of cancer, retrieve model-specific data and analyse these data. In this report, we detail MTB's contents and capabilities, together with instructions on how to use MTB to search for skin-related tumor models and associated data.
© 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  animal model; database; images; mouse; pathology; skin cancer; tumor

Mesh:

Year:  2014        PMID: 25040013      PMCID: PMC4183210          DOI: 10.1111/exd.12512

Source DB:  PubMed          Journal:  Exp Dermatol        ISSN: 0906-6705            Impact factor:   3.960


  23 in total

1.  A vision for the future of genomics research.

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2.  The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data.

Authors:  D A Begley; D M Krupke; S B Neuhauser; J E Richardson; C J Bult; J T Eppig; J P Sundberg
Journal:  Vet Pathol       Date:  2011-01-31       Impact factor: 2.221

Review 3.  Animal models of human disease: challenges in enabling translation.

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Journal:  Biochem Pharmacol       Date:  2013-08-14       Impact factor: 5.858

Review 4.  Molecular cytogenetics: recent developments and applications in cancer.

Authors:  K Das; P Tan
Journal:  Clin Genet       Date:  2013-08-06       Impact factor: 4.438

5.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:  Ewan Birney; John A Stamatoyannopoulos; Anindya Dutta; Roderic Guigó; Thomas R Gingeras; Elliott H Margulies; Zhiping Weng; Michael Snyder; Emmanouil T Dermitzakis; Robert E Thurman; Michael S Kuehn; Christopher M Taylor; Shane Neph; Christoph M Koch; Saurabh Asthana; Ankit Malhotra; Ivan Adzhubei; Jason A Greenbaum; Robert M Andrews; Paul Flicek; Patrick J Boyle; Hua Cao; Nigel P Carter; Gayle K Clelland; Sean Davis; Nathan Day; Pawandeep Dhami; Shane C Dillon; Michael O Dorschner; Heike Fiegler; Paul G Giresi; Jeff Goldy; Michael Hawrylycz; Andrew Haydock; Richard Humbert; Keith D James; Brett E Johnson; Ericka M Johnson; Tristan T Frum; Elizabeth R Rosenzweig; Neerja Karnani; Kirsten Lee; Gregory C Lefebvre; Patrick A Navas; Fidencio Neri; Stephen C J Parker; Peter J Sabo; Richard Sandstrom; Anthony Shafer; David Vetrie; Molly Weaver; Sarah Wilcox; Man Yu; Francis S Collins; Job Dekker; Jason D Lieb; Thomas D Tullius; Gregory E Crawford; Shamil Sunyaev; William S Noble; Ian Dunham; France Denoeud; Alexandre Reymond; Philipp Kapranov; Joel Rozowsky; Deyou Zheng; Robert Castelo; Adam Frankish; Jennifer Harrow; Srinka Ghosh; Albin Sandelin; Ivo L Hofacker; Robert Baertsch; Damian Keefe; Sujit Dike; Jill Cheng; Heather A Hirsch; Edward A Sekinger; Julien Lagarde; Josep F Abril; Atif Shahab; Christoph Flamm; Claudia Fried; Jörg Hackermüller; Jana Hertel; Manja Lindemeyer; Kristin Missal; Andrea Tanzer; Stefan Washietl; Jan Korbel; Olof Emanuelsson; Jakob S Pedersen; Nancy Holroyd; Ruth Taylor; David Swarbreck; Nicholas Matthews; Mark C Dickson; Daryl J Thomas; Matthew T Weirauch; James Gilbert; Jorg Drenkow; Ian Bell; XiaoDong Zhao; K G Srinivasan; Wing-Kin Sung; Hong Sain Ooi; Kuo Ping Chiu; Sylvain Foissac; Tyler Alioto; Michael Brent; Lior Pachter; Michael L Tress; Alfonso Valencia; Siew Woh Choo; Chiou Yu Choo; Catherine Ucla; Caroline Manzano; Carine Wyss; Evelyn Cheung; Taane G Clark; James B Brown; Madhavan Ganesh; Sandeep Patel; Hari Tammana; Jacqueline Chrast; Charlotte N Henrichsen; Chikatoshi Kai; Jun Kawai; Ugrappa Nagalakshmi; Jiaqian Wu; Zheng Lian; Jin Lian; Peter Newburger; Xueqing Zhang; Peter Bickel; John S Mattick; Piero Carninci; Yoshihide Hayashizaki; Sherman Weissman; Tim Hubbard; Richard M Myers; Jane Rogers; Peter F Stadler; Todd M Lowe; Chia-Lin Wei; Yijun Ruan; Kevin Struhl; Mark Gerstein; Stylianos E Antonarakis; Yutao Fu; Eric D Green; Ulaş Karaöz; Adam Siepel; James Taylor; Laura A Liefer; Kris A Wetterstrand; Peter J Good; Elise A Feingold; Mark S Guyer; Gregory M Cooper; George Asimenos; Colin N Dewey; Minmei Hou; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; Haiyan Huang; Nancy R Zhang; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Michael Seringhaus; Deanna Church; Kate Rosenbloom; W James Kent; Eric A Stone; Serafim Batzoglou; Nick Goldman; Ross C Hardison; David Haussler; Webb Miller; Arend Sidow; Nathan D Trinklein; Zhengdong D Zhang; Leah Barrera; Rhona Stuart; David C King; Adam Ameur; Stefan Enroth; Mark C Bieda; Jonghwan Kim; Akshay A Bhinge; Nan Jiang; Jun Liu; Fei Yao; Vinsensius B Vega; Charlie W H Lee; Patrick Ng; Atif Shahab; Annie Yang; Zarmik Moqtaderi; Zhou Zhu; Xiaoqin Xu; Sharon Squazzo; Matthew J Oberley; David Inman; Michael A Singer; Todd A Richmond; Kyle J Munn; Alvaro Rada-Iglesias; Ola Wallerman; Jan Komorowski; Joanna C Fowler; Phillippe Couttet; Alexander W Bruce; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; David A Nix; Ghia Euskirchen; Stephen Hartman; Alexander E Urban; Peter Kraus; Sara Van Calcar; Nate Heintzman; Tae Hoon Kim; Kun Wang; Chunxu Qu; Gary Hon; Rosa Luna; Christopher K Glass; M Geoff Rosenfeld; Shelley Force Aldred; Sara J Cooper; Anason Halees; Jane M Lin; Hennady P Shulha; Xiaoling Zhang; Mousheng Xu; Jaafar N S Haidar; Yong Yu; Yijun Ruan; Vishwanath R Iyer; Roland D Green; Claes Wadelius; Peggy J Farnham; Bing Ren; Rachel A Harte; Angie S Hinrichs; Heather Trumbower; Hiram Clawson; Jennifer Hillman-Jackson; Ann S Zweig; Kayla Smith; Archana Thakkapallayil; Galt Barber; Robert M Kuhn; Donna Karolchik; Lluis Armengol; Christine P Bird; Paul I W de Bakker; Andrew D Kern; Nuria Lopez-Bigas; Joel D Martin; Barbara E Stranger; Abigail Woodroffe; Eugene Davydov; Antigone Dimas; Eduardo Eyras; Ingileif B Hallgrímsdóttir; Julian Huppert; Michael C Zody; Gonçalo R Abecasis; Xavier Estivill; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George M Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Maxim Koriabine; Mikhail Nefedov; Kazutoyo Osoegawa; Yuko Yoshinaga; Baoli Zhu; Pieter J de Jong
Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

6.  Pathbase: a database of mutant mouse pathology.

Authors:  Paul N Schofield; Jonathan B L Bard; Catherine Booth; Jacques Boniver; Vincenzo Covelli; Philippe Delvenne; Michele Ellender; Wilhelm Engstrom; Wolfgang Goessner; Michael Gruenberger; Heinz Hoefler; John Hopewell; Mariatheresa Mancuso; Carmel Mothersill; Christopher S Potten; Leticia Quintanilla-Fend; Bjorn Rozell; Hannu Sariola; John P Sundberg; Andrew Ward
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

7.  Highly pigmented Tg(Grm1) mouse melanoma develops non-pigmented melanoma cells in distant metastases.

Authors:  Susanne Schiffner; Suzie Chen; Jürgen C Becker; Anja-Katrin Bosserhoff
Journal:  Exp Dermatol       Date:  2012-08-07       Impact factor: 3.960

Review 8.  The Mouse Tumor Biology database.

Authors:  Debra M Krupke; Dale A Begley; John P Sundberg; Carol J Bult; Janan T Eppig
Journal:  Nat Rev Cancer       Date:  2008-04-24       Impact factor: 60.716

Review 9.  Animal models of disease: pre-clinical animal models of cancer and their applications and utility in drug discovery.

Authors:  Bruce A Ruggeri; Faye Camp; Sheila Miknyoczki
Journal:  Biochem Pharmacol       Date:  2013-06-28       Impact factor: 5.858

10.  Humanized mouse model of ovarian cancer recapitulates patient solid tumor progression, ascites formation, and metastasis.

Authors:  Richard B Bankert; Sathy V Balu-Iyer; Kunle Odunsi; Leonard D Shultz; Raymond J Kelleher; Jennifer L Barnas; Michelle Simpson-Abelson; Robert Parsons; Sandra J Yokota
Journal:  PLoS One       Date:  2011-09-15       Impact factor: 3.240

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  4 in total

1.  Skin Diseases in Laboratory Mice: Approaches to Drug Target Identification and Efficacy Screening.

Authors:  John P Sundberg; Kathleen A Silva; Lloyd E King; C Herbert Pratt
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2.  Finding mouse models of human lymphomas and leukemia's using the Jackson laboratory mouse tumor biology database.

Authors:  Dale A Begley; John P Sundberg; Debra M Krupke; Steven B Neuhauser; Carol J Bult; Janan T Eppig; Herbert C Morse; Jerrold M Ward
Journal:  Exp Mol Pathol       Date:  2015-08-21       Impact factor: 3.362

3.  Approaches to Investigating Complex Genetic Traits in a Large-Scale Inbred Mouse Aging Study.

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4.  Genetic determinants of fibro-osseous lesions in aged inbred mice.

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Journal:  Exp Mol Pathol       Date:  2015-11-14       Impact factor: 3.362

  4 in total

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