Literature DB >> 25037933

Identifying group discriminative and age regressive sub-networks from DTI-based connectivity via a unified framework of non-negative matrix factorization and graph embedding.

Yasser Ghanbari1, Alex R Smith1, Robert T Schultz2, Ragini Verma3.   

Abstract

Diffusion tensor imaging (DTI) offers rich insights into the physical characteristics of white matter (WM) fiber tracts and their development in the brain, facilitating a network representation of brain's traffic pathways. Such a network representation of brain connectivity has provided a novel means of investigating brain changes arising from pathology, development or aging. The high dimensionality of these connectivity networks necessitates the development of methods that identify the connectivity building blocks or sub-network components that characterize the underlying variation in the population. In addition, the projection of the subject networks into the basis set provides a low dimensional representation of it, that teases apart different sources of variation in the sample, facilitating variation-specific statistical analysis. We propose a unified framework of non-negative matrix factorization and graph embedding for learning sub-network patterns of connectivity by their projective non-negative decomposition into a reconstructive basis set, as well as, additional basis sets representing variational sources in the population like age and pathology. The proposed framework is applied to a study of diffusion-based connectivity in subjects with autism that shows localized sparse sub-networks which mostly capture the changes related to pathology and developmental variations.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Autism and development; Connectivity analysis; Diffusion MRI; Graph embedding; Non-negative matrix factorization

Mesh:

Year:  2014        PMID: 25037933      PMCID: PMC4205764          DOI: 10.1016/j.media.2014.06.006

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  71 in total

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5.  A Bayesian approach for stochastic white matter tractography.

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Authors:  C Lord; S Risi; L Lambrecht; E H Cook; B L Leventhal; P C DiLavore; A Pickles; M Rutter
Journal:  J Autism Dev Disord       Date:  2000-06

10.  Conditional mutual information maps as descriptors of net connectivity levels in the brain.

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  8 in total

1.  Establishing a link between sex-related differences in the structural connectome and behaviour.

Authors:  Birkan Tunç; Berkan Solmaz; Drew Parker; Theodore D Satterthwaite; Mark A Elliott; Monica E Calkins; Kosha Ruparel; Raquel E Gur; Ruben C Gur; Ragini Verma
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2.  Network component analysis reveals developmental trajectories of structural connectivity and specific alterations in autism spectrum disorder.

Authors:  Gareth Ball; Richard Beare; Marc L Seal
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4.  Label-Informed Non-negative Matrix Factorization with Manifold Regularization for Discriminative Subnetwork Detection.

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5.  On characterizing population commonalities and subject variations in brain networks.

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Review 6.  A Network Neuroscience Approach to Typical and Atypical Brain Development.

Authors:  Sarah E Morgan; Simon R White; Edward T Bullmore; Petra E Vértes
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7.  Interactions Between Aging and Alzheimer's Disease on Structural Brain Networks.

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8.  Spatiotemporal Analysis of Developing Brain Networks.

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  8 in total

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