Literature DB >> 25036478

Exploration of polar lipid accumulation profiles in Euglena gracilis using LipidBlast, an MS/MS spectral library constructed in silico.

Takumi Ogawa1, Takeshi Furuhashi, Atsushi Okazawa, Rai Nakai, Masami Nakazawa, Tobias Kind, Oliver Fiehn, Shigehiko Kanaya, Masanori Arita, Daisaku Ohta.   

Abstract

A rapid protocol for polar lipid profiling was applied to Euglena gracilis lipid metabolism by LipidBlast, an MS/MS spectral similarity search tool. The similarity search results suggested anoxia-induced polar lipid metabolism in Euglena characterized by the accumulation of differential lipid classes, carbon chain lengths, and unsaturated bond numbers. The informatics-supported MS spectral search provides an alternative option for global lipid profiling studies.

Entities:  

Keywords:  Euglena gracilis; LC–MS/MS; LipidBlast; polar lipid profiling

Mesh:

Substances:

Year:  2014        PMID: 25036478     DOI: 10.1080/09168451.2014.877826

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  5 in total

1.  The Lipid Composition of Euglena gracilis Middle Plastid Membrane Resembles That of Primary Plastid Envelopes.

Authors:  Lucia Tomečková; Aleš Tomčala; Miroslav Oborník; Vladimír Hampl
Journal:  Plant Physiol       Date:  2020-10-02       Impact factor: 8.340

2.  LipidBlast templates as flexible tools for creating new in-silico tandem mass spectral libraries.

Authors:  Tobias Kind; Yozo Okazaki; Kazuki Saito; Oliver Fiehn
Journal:  Anal Chem       Date:  2014-11-06       Impact factor: 6.986

3.  Data preprocessing workflow for exhaled breath analysis by GC/MS using open sources.

Authors:  Rosa Alba Sola Martínez; José María Pastor Hernández; Gema Lozano Terol; Julia Gallego-Jara; Luis García-Marcos; Manuel Cánovas Díaz; Teresa de Diego Puente
Journal:  Sci Rep       Date:  2020-12-15       Impact factor: 4.379

4.  An in silico MS/MS library for automatic annotation of novel FAHFA lipids.

Authors:  Yan Ma; Tobias Kind; Arpana Vaniya; Ingrid Gennity; Johannes F Fahrmann; Oliver Fiehn
Journal:  J Cheminform       Date:  2015-11-16       Impact factor: 5.514

5.  Alterations of Membrane Lipid Content Correlated With Chloroplast and Mitochondria Development in Euglena gracilis.

Authors:  Shiori Shibata; Shin-Ichi Arimura; Takahiro Ishikawa; Koichiro Awai
Journal:  Front Plant Sci       Date:  2018-03-27       Impact factor: 5.753

  5 in total

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