| Literature DB >> 25036316 |
Yun Zhu1, Jingyun Yang2, Fawn Yeh3, Shelley A Cole4, Karin Haack4, Elisa T Lee3, Barbara V Howard5, Jinying Zhao1.
Abstract
Cigarette smoke is a strong risk factor for obesity and cardiovascular disease. The effect of genetic variants involved in nicotine metabolism on obesity or body composition has not been well studied. Though many genetic variants have previously been associated with adiposity or body fat distribution, a single variant usually confers a minimal individual risk. The goal of this study is to evaluate the joint association of multiple variants involved in cigarette smoke or nicotine dependence with obesity-related phenotypes in American Indians. To achieve this goal, we genotyped 61 tagSNPs in seven genes encoding nicotine acetylcholine receptors (nAChRs) in 3,665 American Indians participating in the Strong Heart Family Study. Single SNP association with obesity-related traits was tested using family-based association, adjusting for traditional risk factors including smoking. Joint association of all SNPs in the seven nAChRs genes were examined by gene-family analysis based on weighted truncated product method (TPM). Multiple testing was controlled by false discovery rate (FDR). Results demonstrate that multiple SNPs showed weak individual association with one or more measures of obesity, but none survived correction for multiple testing. However, gene-family analysis revealed significant associations with waist circumference (p = 0.0001) and waist-to-hip ratio (p = 0.0001), but not body mass index (p = 0.20) and percent body fat (p = 0.29), indicating that genetic variants are jointly associated with abdominal, but not general, obesity among American Indians. The observed combined genetic effect is independent of cigarette smoking per se. In conclusion, multiple variants in the nAChR gene family are jointly associated with abdominal obesity in American Indians, independent of general obesity and cigarette smoking per se.Entities:
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Year: 2014 PMID: 25036316 PMCID: PMC4103845 DOI: 10.1371/journal.pone.0102220
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of study participants according to smoking status (n = 3,640).
| Ever smoker (n = 2116) (mean ± SD or %) | Never smoker (n = 1524) (mean ± SD or %)) | P‡ | |
| Age (years) | |||
| Mean | 41.2±15.6 | 37.9±18.5 | <0.0001 |
| Range | 14.09–93.25 | 15.45–90.84 | |
| Male sex (%) | 44.5 | 33.9 | <0.0001 |
| Type 2 Diabetes (%) | 24.2 | 21.0 | 0.49 |
| Body mass index (kg/m2) | 32.2±7.9 | 32.3±7.9 | 0.72 |
| Waist circumference (cm) | 105.3±18.2 | 103.6±19.1 | 0.20 |
| Waist-to-hip ratio | 0.92±0.08 | 0.90±0.08 | 0.002 |
| Percent body fat | 36.8±10.0 | 38.0±10.4 | 0.62 |
| Systolic blood pressure (mmHg) | 123.4±17.0 | 121.7±17.3 | 0.39 |
| Diastolic blood pressure(mmHg) | 76.8±10.9 | 75.5±11.5 | 0.17 |
| High-density lipoprotein (mg/dL) | 50.5±14.5 | 51.3±14.7 | 0.44 |
| Low-density lipoprotein (mg/dL) | 99.4±29.7 | 96.4±28.9 | 0.30 |
| Plasma hsCRP (mg/L) | 7.0±9.2 | 6.8±9.9 | 0.45 |
| eGFR (ml/min/1.73 m2) | 99.1±27.2 | 101.8±30.1 | 0.96 |
| Total cholesterol (mg/dL) | 183.4±38.6 | 177.2±34.8 | 0.006 |
| Total triglyceride (mg/dL) | 177.2±197.3 | 155.4±123.8 | 0.01 |
| Fasting glucose (mg/dL) | 115.8±52.7 | 112.1±52.8 | 0.52 |
| Insulin (uU/mL) | 18.7±20.2 | 18.8±20.4 | 0.74 |
*P values were obtained by GEE, adjusting for age and sex when appropriate; ‡ Former plus current smokers.
P-values of single SNP association analysis for the 61 SNPs with obesity measures by FBAT (n = 3,640).
| SNP | Gene | BMI | WC | WHR | %BF | SNP | Gene | BMI | WC | WHR | %BF |
| rs1051730 |
| 0.1877 | 0.0412 | 0.0365 | 0.8535 | rs905739 |
| 0.3011 | 0.1160 | 0.3512 | 0.4066 |
| rs11637630 |
| 0.2825 | 0.2414 | 0.3157 | 0.5119 | rs951266 |
| 0.3051 | 0.0853 | 0.1057 | 0.5417 |
| rs12910984 |
| 0.2631 | 0.1942 | 0.2390 | 0.5500 | rs2304297 |
| 0.6362 | 0.4043 | 0.3585 | 0.3681 |
| rs12914385 |
| 0.0980 | 0.0218 | 0.0178 | 0.1244 | rs2072658 |
| 0.1954 | 0.1876 | 0.3787 | 0.6123 |
| rs1317286 |
| 0.0915 | 0.0167 | 0.0117 | 0.5951 | rs2072659 |
| 0.3214 | 0.1891 | 0.0823 | 0.2303 |
| rs1878399 |
| 0.4281 | 0.8369 | 0.6572 | 0.3977 | rs2072660 |
| 0.8459 | 0.5275 | 0.0926 | 0.2502 |
| rs3743074 |
| 0.3945 | 0.3921 | 0.2356 | 0.1417 | rs2072661 |
| 0.7452 | 0.4177 | 0.0584 | 0.2765 |
| rs3743078 |
| 0.3160 | 0.2671 | 0.3977 | 0.6535 | rs3811450 |
| 0.1970 | 0.1414 | 0.0260 | 0.1095 |
| rs578776 |
| 0.3284 | 0.2962 | 0.5690 | 0.1495 | rs10958726 |
| 0.0594 | 0.0225 | 0.1464 | 0.0168 |
| rs6495308 |
| 0.3171 | 0.2105 | 0.1912 | 0.5500 | rs13277254 |
| 0.1179 | 0.0535 | 0.2173 | 0.0491 |
| rs660652 |
| 0.6294 | 0.6067 | 0.3738 | 0.2455 | rs13280604 |
| 0.1150 | 0.0479 | 0.2607 | 0.0513 |
| rs7177514 |
| 0.2710 | 0.1923 | 0.2423 | 0.5869 | rs4950 |
| 0.1437 | 0.0542 | 0.2759 | 0.0635 |
| rs2236196 |
| 0.2525 | 0.1869 | 0.1944 | 0.6613 | rs4952 |
| 0.0470 | 0.1484 | 0.5240 | 0.1034 |
| rs2273504 |
| 0.1865 | 0.2433 | 0.5767 | 0.1302 | rs4953 |
| 0.0470 | 0.1484 | 0.5240 | 0.1034 |
| rs3787116 |
| 0.1821 | 0.2634 | 0.2975 | 0.1245 | rs4954 |
| 0.6603 | 0.5589 | 0.9305 | 0.3235 |
| rs3787137 |
| 0.4825 | 0.4961 | 0.1098 | 0.1499 | rs6474413 |
| 0.0741 | 0.0284 | 0.1514 | 0.0257 |
| rs6122429 |
| 0.1202 | 0.2037 | 0.8469 | 0.2186 | rs11633223 |
| 0.1690 | 0.2089 | 0.2744 | 0.5478 |
| rs11633585 |
| 0.3977 | 0.4575 | 0.5277 | 0.9635 | rs11636605 |
| 0.1269 | 0.1615 | 0.1820 | 0.2898 |
| rs11637635 |
| 0.6294 | 0.5317 | 0.3256 | 0.2455 | rs12440014 |
| 0.9045 | 0.7610 | 0.3659 | 0.6559 |
| rs16969968 |
| 0.1503 | 0.0381 | 0.0344 | 0.7120 | rs12914008 |
| 0.7220 | 0.5278 | 0.1373 | 0.6542 |
| rs17483686 |
| 0.0221 | 0.0257 | 0.2607 | 0.2522 | rs1316971 |
| 0.1115 | 0.1543 | 0.1947 | 0.2898 |
| rs17486278 |
| 0.1903 | 0.0605 | 0.0660 | 0.7120 | rs16970006 |
| 0.3634 | 0.2398 | 0.2761 | 0.2166 |
| rs2036527 |
| 0.1006 | 0.0228 | 0.0161 | 0.6179 | rs17487223 |
| 0.3746 | 0.3187 | 0.1100 | 0.0967 |
| rs514743 |
| 0.6566 | 0.5117 | 0.3174 | 0.2507 | rs1948 |
| 0.3430 | 0.7518 | 0.4674 | 0.5464 |
| rs569207 |
| 0.3125 | 0.2745 | 0.3082 | 0.7889 | rs1996371 |
| 0.0797 | 0.0216 | 0.0118 | 0.3807 |
| rs588765 |
| 0.7221 | 0.8917 | 0.5775 | 0.3476 | rs3813567 |
| 0.1407 | 0.0573 | 0.0996 | 0.5025 |
| rs615470 |
| 0.4599 | 0.6513 | 0.5450 | 0.1476 | rs3971872 |
| 0.1438 | 0.3257 | 0.2571 | 0.7550 |
| rs637137 |
| 0.3166 | 0.2928 | 0.3302 | 0.8278 | rs7178270 |
| 0.4334 | 0.3123 | 0.1807 | 0.5865 |
| rs680244 |
| 0.6953 | 0.6374 | 0.4410 | 0.5823 | rs8023462 |
| 0.4391 | 0.8614 | 0.2181 | 0.4958 |
| rs684513 |
| 0.9469 | 0.7493 | 0.6940 | 0.7512 | rs950776 |
| 0.6998 | 0.4449 | 0.0702 | 0.8830 |
| rs8034191 |
| 0.1258 | 0.0199 | 0.0187 | 0.3158 |
All P-values adjusted for age, sex, study center, smoking status, alcohol intake, levels of physical activity, total daily energy intake, social economics status and diabetes status.
Gene-based and gene-family association of nAChRs variants with obesity (n = 3,640).
| BMI | WC | WHR | %BF | |
| CHRNA3 | 0.1730 | 0.0360 | 0.0320 | 0.4870 |
| CHRNA4 | 0.2380 | 0.2220 | 0.2150 | 0.1460 |
| CHRNA5 | 0.3050 |
| 0.0160 | 0.5870 |
| CHRNA6 | 0.6352 | 0.4033 | 0.3575 | 0.3671 |
| CHRNB2 | 0.3840 | 0.3010 | 0.0190 | 0.2110 |
| CHRNB3 | 0.0470 | 0.0370 | 0.1980 | 0.0300 |
| CHRNB4 | 0.1890 | 0.0560 | 0.0950 | 0.3310 |
| Gene-family association | 0.1970 |
|
| 0.2910 |
P-values in bold indicates significant association after adjusting for multiple testing by FDR.