Literature DB >> 25034014

Constrained geometric dynamics of the Fenna-Matthews-Olson complex: the role of correlated motion in reducing uncertainty in excitation energy transfer.

Alexander S Fokas1, Daniel J Cole, Alex W Chin.   

Abstract

The trimeric Fenna-Mathews-Olson (FMO) complex of green sulphur bacteria is a well-studied example of a photosynthetic pigment-protein complex, in which the electronic properties of the pigments are modified by the protein environment to promote efficient excitonic energy transfer from antenna complexes to the reaction centres. By a range of simulation methods, many of the electronic properties of the FMO complex can be extracted from knowledge of the static crystal structure. However, the recent observation and analysis of long-lasting quantum dynamics in the FMO complex point to protein dynamics as a key factor in protecting and generating quantum coherence under laboratory conditions. While fast inter- and intra-molecular vibrations have been investigated extensively, the slow, conformational dynamics which effectively determine the optical inhomogeneous broadening of experimental ensembles has received less attention. The following study employs constrained geometric dynamics to study the flexibility in the protein network by efficiently generating the accessible conformational states from the published crystal structure. Statistical and principle component analyses reveal highly correlated low frequency motions between functionally relevant elements, including strong correlations between pigments that are excitonically coupled. Our analysis reveals a hierarchy of structural interactions which enforce these correlated motions, from the level of monomer-monomer interfaces right down to the α-helices, β-sheets and pigments. In addition to inducing strong spatial correlations across the conformational ensemble, we find that the overall rigidity of the FMO complex is exceptionally high. We suggest that these observations support the idea of highly correlated inhomogeneous disorder of the electronic excited states, which is further supported by the remarkably low variance (typically <5%) of the excitonic couplings of the conformational ensemble.

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Year:  2014        PMID: 25034014     DOI: 10.1007/s11120-014-0027-3

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  49 in total

1.  Atomistic study of the long-lived quantum coherences in the Fenna-Matthews-Olson complex.

Authors:  Sangwoo Shim; Patrick Rebentrost; Stéphanie Valleau; Alán Aspuru-Guzik
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  Exploiting Structured Environments for Efficient Energy Transfer: The Phonon Antenna Mechanism.

Authors:  Marco Del Rey; Alex W Chin; Susana F Huelga; Martin B Plenio
Journal:  J Phys Chem Lett       Date:  2013-03-06       Impact factor: 6.475

3.  Calculation of pigment transition energies in the FMO protein: from simplicity to complexity and back.

Authors:  Julia Adolphs; Frank Müh; Mohamed El-Amine Madjet; Thomas Renger
Journal:  Photosynth Res       Date:  2007-10-05       Impact factor: 3.573

4.  Constrained geometric simulation of the nicotinic acetylcholine receptor.

Authors:  William J Belfield; Daniel J Cole; Ian L Martin; Mike C Payne; P-L Chau
Journal:  J Mol Graph Model       Date:  2014-06-06       Impact factor: 2.518

5.  Theory and Simulation of the Environmental Effects on FMO Electronic Transitions.

Authors:  Carsten Olbrich; Johan Strümpfer; Klaus Schulten; Ulrich Kleinekathöfer
Journal:  J Phys Chem Lett       Date:  2011-06-30       Impact factor: 6.475

6.  Hot spots and transient pockets: predicting the determinants of small-molecule binding to a protein-protein interface.

Authors:  Alexander Metz; Christopher Pfleger; Hannes Kopitz; Stefania Pfeiffer-Marek; Karl-Heinz Baringhaus; Holger Gohlke
Journal:  J Chem Inf Model       Date:  2011-12-27       Impact factor: 4.956

Review 7.  Parallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure.

Authors:  Joseph A Marsh; Sarah A Teichmann
Journal:  Bioessays       Date:  2013-11-25       Impact factor: 4.345

8.  Normal mode analysis of the spectral density of the Fenna-Matthews-Olson light-harvesting protein: how the protein dissipates the excess energy of excitons.

Authors:  Thomas Renger; Alexander Klinger; Florian Steinecker; Marcel Schmidt am Busch; Jorge Numata; Frank Müh
Journal:  J Phys Chem B       Date:  2012-12-10       Impact factor: 2.991

9.  Non-classicality of the molecular vibrations assisting exciton energy transfer at room temperature.

Authors:  Edward J O'Reilly; Alexandra Olaya-Castro
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

10.  Impact of intracellular domain flexibility upon properties of activated human 5-HT3 receptors.

Authors:  J L Kozuska; I M Paulsen; W J Belfield; I L Martin; D J Cole; A Holt; S M J Dunn
Journal:  Br J Pharmacol       Date:  2014-04       Impact factor: 8.739

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  3 in total

1.  Static Disorder in Excitation Energies of the Fenna-Matthews-Olson Protein: Structure-Based Theory Meets Experiment.

Authors:  Marten L Chaillet; Florian Lengauer; Julian Adolphs; Frank Müh; Alexander S Fokas; Daniel J Cole; Alex W Chin; Thomas Renger
Journal:  J Phys Chem Lett       Date:  2020-11-23       Impact factor: 6.475

2.  Residue Geometry Networks: A Rigidity-Based Approach to the Amino Acid Network and Evolutionary Rate Analysis.

Authors:  Alexander S Fokas; Daniel J Cole; Sebastian E Ahnert; Alex W Chin
Journal:  Sci Rep       Date:  2016-09-14       Impact factor: 4.379

3.  Nonlinear network model analysis of vibrational energy transfer and localisation in the Fenna-Matthews-Olson complex.

Authors:  Sarah E Morgan; Daniel J Cole; Alex W Chin
Journal:  Sci Rep       Date:  2016-11-09       Impact factor: 4.379

  3 in total

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