| Literature DB >> 25032844 |
Li Na Zhao1, Lanyuan Lu2, Lock Yue Chew3, Yuguang Mu4.
Abstract
The single-mutation of genes associated with Alzheimer's disease (AD) increases the production of Aβ peptides. An elevated concentration of Aβ peptides is prone to aggregation into oligomers and further deposition as plaque. Aβ plaques and neurofibrillary tangles are two hallmarks of AD. In this review, we provide a broad overview of the diverses sources that could lead to AD, which include genetic origins, Aβ peptides and tau protein. We shall discuss on tau protein and tau accumulation, which result in neurofibrillary tangles. We detail the mechanisms of Aβ aggregation, fibril formation and its polymorphism. We then show the possible links between Aβ and tau pathology. Furthermore, we summarize the structural data of Aβ and its precursor protein obtained via Nuclear Magnetic Resonance (NMR) or X-ray crystallography. At the end, we go through the C-terminal and N-terminal truncated Aβ variants. We wish to draw reader's attention to two predominant and toxic Aβ species, namely Aβ4-42 and pyroglutamate amyloid-beta peptides, which have been neglected for more than a decade and may be crucial in Aβ pathogenesis due to their dominant presence in the AD brain.Entities:
Mesh:
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Year: 2014 PMID: 25032844 PMCID: PMC4139864 DOI: 10.3390/ijms150712631
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Structural data of amyloid beta peptide obtained from experiments.
| PDB ID | Experimental Technique | Resolution | Release Date | Residue | DOI |
|---|---|---|---|---|---|
| 1AMB [ | SOLUTION NMR | - | 1994-12-20 | 1–28 | - |
| 1AMC [ | SOLUTION NMR | - | 1995-01-26 | 1–28 | - |
| 1AML [ | SOLUTION NMR | - | 1996-01-29 | 1–40 | - |
| 1BA4 [ | SOLUTION NMR | - | 1998-06-17 | 1–40 | - |
| 1BA6 [ | SOLUTION NMR | - | 1998-06-17 | 1–40 | 10.1021/bi972979f |
| 1BJB [ | SOLUTION NMR | - | 1998-11-04 | 1–28 | 10.1006/jsbi.2000.4267 |
| 1BJC [ | SOLUTION NMR | - | 1998-11-18 | 1–28 | 10.1006/jsbi.2000.4267 |
| 1HZ3 [ | SOLUTION NMR | - | 2001-01-31 | 1–26 | 10.1002/pro.5560060902 |
| 1IYT [ | SOLUTION NMR | - | 2003-02-11 | 1–42 | 10.1006/jsbi.2000.4288 |
| 1NMJ [ | SOLUTION NMR | - | 2003-01-28 | 1–28 | 10.1038/7562 |
| 1QWP [ | SOLUTION NMR | - | 1997-07-07 | 25–35 | 10.1021/bi961598j |
| 1QXC [ | SOLUTION NMR | - | 2004-09-14 | 25–35 | - |
| 1QYT [ | SOLUTION NMR | - | 2004-12-14 | 25–35 | 10.1021/jm040773o |
| 1ZE7 [ | SOLUTION NMR | - | 2005-05-03 | 1–16 | 10.1074/jbc.M504454200 |
| 2BP4 [ | SOLUTION NMR | - | 2005-04-21 | 1–16 | 10.1074/jbc.M504454200 |
| 2LI9 [ | SOLUTION NMR | - | 2011-07-20 | 1–16 | 10.1016/j.bbrc.2011.06.133 |
| 2LI9 [ | SOLUTION NMR | - | 2012-01-18 | 1–16 | - |
| 2M9S [ | SOLUTION NMR | - | - | 1–40 | 10.1016/j.bbagen.2013.06.031 |
| 2Y2A [ | X-RAY DIFFRACTION | - | 2011-10-26 | 16–21 | 10.1073/pnas.1112600108 |
| 2Y3J [ | X-RAY DIFFRACTION | 1.91 | - | 30–35 | 10.1073/pnas.1112600108 |
| 2Y3L [ | X-RAY DIFFRACTION | 2.1 | 2011-11-02 | 35–42 | 10.1073/pnas.1112600108 |
| 2Y3K [ | X-RAY DIFFRACTION | 2.1 | 2011-11-02 | 35–42 | 10.1073/pnas.1112600108 |
| 3Q2X [ | X-RAY DIFFRACTION | 2.1 | 2011-11-02 | 27–32 | 10.1073/pnas.1112600108 |
| 3PZZ [ | X-RAY DIFFRACTION | 2.1 | 2011-11-02 | 29–34 | 10.1073/pnas.1112600108 |
| 3OVJ [ | X-RAY DIFFRACTION | 1.8 | 2011-07-06 | 16–21 | 10.1016/j.molcel.2004.06.037 |
| 3OW9 [ | X-RAY DIFFRACTION | 1.8 | 2011-08-31 | 16–21 | 10.1371/journal.pbio.1001080 |
| SOLUTION NMR | - | 2004-09-14 | 25–35 | 10.1021/jm040773o | |
| SOLUTION NMR | - | 2012-01-18 | 1–16 | 10.1016/j.bpj.2011.11.4006 | |
| 2OTK [ | 3D NMR | - | 2013-09-11 | 1–40 | 10.1016/j.bbagen.2013.06.031 |
Experimental data of amyloid beta oligomers, fibrills and binding proteins.
| PDB ID | Experimental Technique | Resolution | Release Date | Residues Count | DOI |
|---|---|---|---|---|---|
| 1AAP [ | X-RAY DIFFRACTION | 1.5 | 1991-10-15 | 116 | - |
| 1BRC [ | X-RAY DIFFRACTION | 2.5 | 1994-05-31 | 279 | 10.1006/jmbi.1993.1211 |
| 1TAW [ | X-RAY DIFFRACTION | 1.8 | 1997-06-24 | 281 | 10.1002/pro.5560060902 |
| 1CA0 [ | X-RAY DIFFRACTION | 2.1 | 1997-07-23 | 590 | 10.1002/pro.5560060902 |
| 1X11 [ | X-RAY DIFFRACTION | 2.5 | 1998-01-14 | 370 | 10.1093/emboj/16.20.6141 |
| 1MWP [ | X-RAY DIFFRACTION | 1.8 | 2000-03-15 | 96 | 10.1038/7562 |
| 1OQN [ | X-RAY DIFFRACTION | 2.3 | 2003-08-05 | 336 | 10.1074/jbc.M304384200 |
| 1OWT [ | SOLUTION NMR | - | 2003-05-13 | 66 | 10.1074/jbc.M300629200 |
| 1TKN [ | SOLUTION NMR | - | 2004-08-03 | 110 | 10.1021/bi049041o |
| 1ZJD [ | X-RAY DIFFRACTION | 2.6 | 2005-08-09 | 294 | 10.1074/jbc.M504990200 |
| 2BEG [ | SOLUTION NMR | - | 2005-11-22 | 210 | 10.1073/pnas.0506723102 |
| 2G47 [ | X-RAY DIFFRACTION | 2.1 | 2006-10-24 | 2060 | 10.1038/nature05143 |
| 2FJZ [ | X-RAY DIFFRACTION | 1.61 | 2007-01-16 | 59 | 10.1016/j.jmb.2006.12.041 |
| 2FK1 [ | X-RAY DIFFRACTION | 1.6 | 2007-01-16 | 59 | 10.1016/j.jmb.2006.12.041 |
| 2FK2 [ | X-RAY DIFFRACTION | 1.65 | 2007-01-16 | 59 | 10.1016/j.jmb.2006.12.041 |
| 2FK3 [ | X-RAY DIFFRACTION | 2.4 | 2007-01-16 | 472 | 10.1016/j.jmb.2006.12.041 |
| 2FKL [ | X-RAY DIFFRACTION | 2.5 | 2007-01-16 | 132 | 10.1016/j.jmb.2006.12.041 |
| 2FMA [ | X-RAY DIFFRACTION | 0.85 | 2007-01-16 | 59 | 10.1107/S1744309107041139 |
| 2IPU [ | X-RAY DIFFRACTION | 1.65 | 2007-10-09 | 906 | 10.1073/pnas.0705888104 |
| 2R0W [ | X-RAY DIFFRACTION | 2.5 | 2007-10-16 | 450 | 10.1073/pnas.0705888104 |
| 2OTK [ | SOLUTION NMR | - | 2008-02-12 | 182 | 10.1073/pnas.0711731105 |
| 2ROZ [ | SOLUTION NMR | - | 2008-07-22 | 168 | 10.1074/jbc.M803892200 |
| 3BAE [ | X-RAY DIFFRACTION | 1.59 | 2008-04-15 | 474 | 10.1016/j.jmb.2007.12.036 |
| 3BKJ [ | X-RAY DIFFRACTION | 1.59 | 2008-04-15 | 492 | 10.1016/j.jmb.2007.12.036 |
| 3DXC [ | X-RAY DIFFRACTION | 2.1 | 2008-09-16 | 350 | 10.1038/embor.2008.188 |
| 3DXD [ | X-RAY DIFFRACTION | 2.2 | 2008-09-16 | 350 | 10.1038/embor.2008.188 |
| 3DXE [ | X-RAY DIFFRACTION | 2.0 | 2008-09-16 | 350 | 10.1038/embor.2008.188 |
| 3GCI [ | X-RAY DIFFRACTION | 2.04 | 2009-03-10 | 126 | - |
| 3IFL [ | X-RAY DIFFRACTION | 1.5 | 2009-11-17 | 448 | 10.1074/jbc.M109.045187 |
| 3IFN [ | X-RAY DIFFRACTION | 1.5 | 2009-11-17 | 481 | 10.1074/jbc.M109.045187 |
| 3IFO [ | X-RAY DIFFRACTION | 2.15 | 2009-11-17 | 904 | 10.1074/jbc.M109.045187 |
| 3IFP [ | X-RAY DIFFRACTION | 2.95 | 2009-11-17 | 1808 | 10.1074/jbc.M109.045187 |
| 3JQ5 [ | X-RAY DIFFRACTION | 2.03 | 2009-09-29 | 127 | - |
| 3JQL [ | X-RAY DIFFRACTION | 1.2 | 2009-09-29 | 125 | - |
| 2WK3 [ | X-RAY DIFFRACTION | 2.59 | 2009-11-03 | 2122 | 10.1016/j.jmb.2009.10.072 |
| 3KTM [ | X-RAY DIFFRACTION | 2.7 | 2010-02-23 | 1528 | 10.1073/pnas.0911326107 |
| 3L81 [ | X-RAY DIFFRACTION | 1.6 | 2010-06-02 | 308 | 10.1016/j.devcel.2010.01.015 |
| 3JTI [ | X-RAY DIFFRACTION | 1.8 | 2010-07-21 | 127 | - |
| 3L33 [ | X-RAY DIFFRACTION | 2.48 | 2010-09-22 | 1104 | 10.1074/jbc.M110.171348 |
| 3MOQ [ | X-RAY DIFFRACTION | 2.05 | 2011-02-16 | 504 | 10.1523/JNEUROSCI.4259-10.2011 |
| 3MXC [ | X-RAY DIFFRACTION | 2.0 | 2011-05-11 | 110 | 10.1016/j.jmb.2011.09.046 |
| 3NYJ [ | X-RAY DIFFRACTION | 3.2 | 2011-06-01 | 207 | 10.1021/bi101846x |
| 3NYL [ | X-RAY DIFFRACTION | 2.8 | 2011-07-13 | 210 | 10.1016/j.molcel.2004.06.037 |
| 2Y3J [ | X-RAY DIFFRACTION | 1.99 | 2011-11-02 | 48 | 10.1073/pnas.1112600108 |
| 2Y3K [ | X-RAY DIFFRACTION | 1.9 | 2011-11-02 | 64 | 10.1073/pnas.1112600108 |
| 3AYU [ | X-RAY DIFFRACTION | 2.0 | 2011-08-03 | 177 | 10.1074/jbc.M111.264176 |
| 2LMN [ | SOLID-STATE NMR | - | 2011-12-28 | 480 | 10.1021/bi051952q |
| 2LMO [ | SOLID-STATE NMR | - | 2011-12-28 | 480 | 10.1021/bi051952q |
| 2LMP [ | SOLID-STATE NMR | - | 2011-12-28 | 720 | 10.1073/pnas.0806270105 |
| 2LMQ [ | SOLID-STATE NMR | - | 2011-12-28 | 720 | 10.1073/pnas.0806270105 |
| 2LNQ [ | SOLID-STATE NMR | - | 2012-02-08 | 320 | 10.1073/pnas.1111305109 |
| 2LOH [ | SOLUTION NMR | - | 2012-05-23 | 86 | 10.1016/j.febslet.2012.04.062 |
| 2LP1 [ | SOLUTION NMR | - | 2012-06-06 | 122 | 10.1126/science.1219988 |
| 2LLM [ | SOLUTION NMR | - | 2012-06-20 | 43 | PMCID: PMC3347594 |
| 3U0T [ | X-RAY DIFFRACTION | 2.5 | 2012-01-11 | 894 | 10.1016/j.jmb.2011.11.047 |
| 3UMH [ | X-RAY DIFFRACTION | 2.0 | 2012-01-25 | 211 | 10.1016/j.jmb.2011.12.057 |
| 3UMI [ | X-RAY DIFFRACTION | 2.4 | 2012-01-25 | 211 | 10.1016/j.jmb.2011.12.057 |
| 3UMK [ | X-RAY DIFFRACTION | 2.6 | 2012-01-25 | 211 | 10.1016/j.jmb.2011.12.057 |
| 3SV1 [ | X-RAY DIFFRACTION | 3.3 | 2012-07-11 | 612 | 10.1093/jmcb/mjs033 |
| 4HIX [ | X-RAY DIFFRACTION | 2.2 | 2013-03-13 | 475 | 10.1038/srep01302 |
| 2M4J [ | SOLUTION NMR | - | 2013-09-25 | 360 | 10.1016/j.cell.2013.08.035 |
| 2LZ3 [ | SOLUTION NMR | - | 2013-10-02 | 56 | - |
| 2LZ4 [ | SOLUTION NMR | - | 2013-10-02 | 56 | - |