Literature DB >> 25028662

On macroscopic quantum phenomena in biomolecules and cells: from Levinthal to Hopfield.

Dejan Raković1, Miroljub Dugić2, Jasmina Jeknić-Dugić3, Milenko Plavšić4, Stevo Jaćimovski5, Jovan Setrajčić6.   

Abstract

In the context of the macroscopic quantum phenomena of the second kind, we hereby seek for a solution-in-principle of the long standing problem of the polymer folding, which was considered by Levinthal as (semi)classically intractable. To illuminate it, we applied quantum-chemical and quantum decoherence approaches to conformational transitions. Our analyses imply the existence of novel macroscopic quantum biomolecular phenomena, with biomolecular chain folding in an open environment considered as a subtle interplay between energy and conformation eigenstates of this biomolecule, governed by quantum-chemical and quantum decoherence laws. On the other hand, within an open biological cell, a system of all identical (noninteracting and dynamically noncoupled) biomolecular proteins might be considered as corresponding spatial quantum ensemble of these identical biomolecular processors, providing spatially distributed quantum solution to a single corresponding biomolecular chain folding, whose density of conformational states might be represented as Hopfield-like quantum-holographic associative neural network too (providing an equivalent global quantum-informational alternative to standard molecular-biology local biochemical approach in biomolecules and cells and higher hierarchical levels of organism, as well).

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Year:  2014        PMID: 25028662      PMCID: PMC4084588          DOI: 10.1155/2014/580491

Source DB:  PubMed          Journal:  Biomed Res Int            Impact factor:   3.411


  14 in total

1.  Quantum mechanics versus macroscopic realism: Is the flux there when nobody looks?

Authors: 
Journal:  Phys Rev Lett       Date:  1985-03-04       Impact factor: 9.161

2.  Ten-microsecond molecular dynamics simulation of a fast-folding WW domain.

Authors:  Peter L Freddolino; Feng Liu; Martin Gruebele; Klaus Schulten
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

3.  Conditions for quantum violation of macroscopic realism.

Authors:  Johannes Kofler; Caslav Brukner
Journal:  Phys Rev Lett       Date:  2008-08-28       Impact factor: 9.161

4.  Unified dynamics for microscopic and macroscopic systems.

Authors: 
Journal:  Phys Rev D Part Fields       Date:  1986-07-15

5.  Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete.

Authors:  B Berger; T Leighton
Journal:  J Comput Biol       Date:  1998       Impact factor: 1.479

Review 6.  From Levinthal to pathways to funnels.

Authors:  K A Dill; H S Chan
Journal:  Nat Struct Biol       Date:  1997-01

7.  Robust proofs of NP-hardness for protein folding: general lattices and energy potentials.

Authors:  W E Hart; S Istrail
Journal:  J Comput Biol       Date:  1997       Impact factor: 1.479

8.  Principles that govern the folding of protein chains.

Authors:  C B Anfinsen
Journal:  Science       Date:  1973-07-20       Impact factor: 47.728

9.  Accelerated simulation of unfolding and refolding of a large single chain globular protein.

Authors:  Gavin M Seddon; Robert P Bywater
Journal:  Open Biol       Date:  2012-07       Impact factor: 6.411

10.  Finding low-energy conformations of lattice protein models by quantum annealing.

Authors:  Alejandro Perdomo-Ortiz; Neil Dickson; Marshall Drew-Brook; Geordie Rose; Alán Aspuru-Guzik
Journal:  Sci Rep       Date:  2012-08-13       Impact factor: 4.379

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