Literature DB >> 25024035

Variations on a common STRUCTURE: new algorithms for a valuable model.

John Novembre1.   

Abstract

Keywords:  admixture; methods; population structure; variational Bayes

Mesh：

Year:  2014        PMID： 25024035      PMCID： PMC4096362          DOI： 10.1534/genetics.114.166264

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


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  21 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  A Bayesian approach to the identification of panmictic populations and the assignment of individuals.

Authors:  K J Dawson; K Belkhir
Journal:  Genet Res       Date:  2001-08       Impact factor: 1.588

3.  Bayesian analysis of genetic differentiation between populations.

Authors:  Jukka Corander; Patrik Waldmann; Mikko J Sillanpää
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

4.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

5.  Estimation of individual admixture: analytical and study design considerations.

Authors:  Hua Tang; Jie Peng; Pei Wang; Neil J Risch
Journal:  Genet Epidemiol       Date:  2005-05       Impact factor: 2.135

6.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

7.  Inferring weak population structure with the assistance of sample group information.

Authors:  Melissa J Hubisz; Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Mol Ecol Resour       Date:  2009-04-01       Impact factor: 7.090

8.  Inference of population splits and mixtures from genome-wide allele frequency data.

Authors:  Joseph K Pickrell; Jonathan K Pritchard
Journal:  PLoS Genet       Date:  2012-11-15       Impact factor: 5.917

9.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

10.  A genealogical interpretation of principal components analysis.

Authors:  Gil McVean
Journal:  PLoS Genet       Date:  2009-10-16       Impact factor: 5.917
View more
  6 in total

Review 1.  Pritchard, Stephens, and Donnelly on Population Structure.

Authors:  John Novembre
Journal:  Genetics       Date:  2016-10       Impact factor: 4.562

2.  pong: fast analysis and visualization of latent clusters in population genetic data.

Authors:  Aaron A Behr; Katherine Z Liu; Gracie Liu-Fang; Priyanka Nakka; Sohini Ramachandran
Journal:  Bioinformatics       Date:  2016-06-09       Impact factor: 6.937

3.  A population genetic assessment of taxonomic species: The case of Lake Malawi cichlid fishes.

Authors:  Catarina Pinho; Vera Cardoso; Jody Hey
Journal:  Mol Ecol Resour       Date:  2019-06-06       Impact factor: 7.090

4.  Exploring Population Structure with Admixture Models and Principal Component Analysis.

Authors:  Chi-Chun Liu; Suyash Shringarpure; Kenneth Lange; John Novembre
Journal:  Methods Mol Biol       Date:  2020

5.  Fine population structure analysis method for genomes of many.

Authors:  Xuedong Pan; Yi Wang; Emily H M Wong; Amalio Telenti; J Craig Venter; Li Jin
Journal:  Sci Rep       Date:  2017-10-03       Impact factor: 4.379

Review 6.  Review of the Forensic Applicability of Biostatistical Methods for Inferring Ancestry from Autosomal Genetic Markers.

Authors:  Torben Tvedebrink
Journal:  Genes (Basel)       Date:  2022-01-14       Impact factor: 4.096
  6 in total

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