| Literature DB >> 25023176 |
Megan L Weber, Hong-Yuan Hsin, Ersan Kalay, Dana S BroŽková, Takehiko Shimizu, Merve Bayram, Kathleen Deeley, Erika C Küchler, Jessalyn Forella, Timothy D Ruff, Vanessa M Trombetta, Regina C Sencak, Michael Hummel, Jessica Briseño-Ruiz, Shankar K Revu, José M Granjeiro, Leonardo S Antunes, Livia A Antunes, Fernanda V Abreu, Marcelo C Costa, Patricia N Tannure, Mine Koruyucu, Asli Patir, Fernando A Poletta, Juan C Mereb, Eduardo E Castilla, Iêda M Orioli, Mary L Marazita, Hongjiao Ouyang, Thottala Jayaraman, Figen Seymen, Alexandre R Vieira1.
Abstract
BACKGROUND: Congenital forms of hearing impairment can be caused by mutations in the estrogen related receptor beta (ESRRB) gene. Our initial linkage studies suggested the ESRRB locus is linked to high caries experience in humans.Entities:
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Year: 2014 PMID: 25023176 PMCID: PMC4112727 DOI: 10.1186/1471-2350-15-81
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1Flow chart of experiments included in this study. Experiments listed in order of appearance in manuscript and listed in the boxes. Results are listed in diamonds. Details of each experiment are provided in the Methods section.
Summary of all individuals analyzed in tests of association, gene expression, and enamel microhardness
| Sample size (mean DMFTa ± SDb) | 477 (9.7 ± 7.3) | 172 (3.8 ± 4.0) | 500 (2.4 ± 3.0) | 320 (1.4 ± 2.7) | 143 (7.1 ± 7.8) | 100 (5.2 ± 3.4) |
| High caries groupc (mean DMFT ± SD) | 298 (13.3 ± 6.7) | 92 (7.2 ± 2.3) | 171 (5.8 ± 2.6) | 53 (6.7 ± 2.8) | 66 (13.0 ± 7.9) | 63 (7.3 ± 2.5) |
| Low caries groupc (mean DMFT ± SD) | 179 (3.6 ± 2.4) | 80 (0) | 329 (0.6 ± 0.9) | 267 (0.4 ± 0.9) | 77 (2.0 ± 2.3) | 37 (1.7 ± 1.0) |
| Females | 224 | 93 | 236 | 158 | 83 | 62 |
| Males | 253 | 79 | 264 | 162 | 60 | 38 |
| Age (mean ± SD) | 25.8 ± 16.3 | 5.4 ± 0.8 | 9.1 ± 3.1 | 3.5 ± 1.5 | 21.7 ± 15.6 | 17.2 ± 3.1 |
| The number of pedigrees | 72 | unrelated | unrelated | unrelated | unrelated | unrelated |
aDecayed, Missing due to caries, Filled Teeth.
bStandard Deviation.
cHigh and low dental caries experience was defined based on our original genome wide linkage study.
Figure 2Dental caries experience of families with hearing impairment DFNB35. Black indicates recessive hearing impairment. Dots indicate individuals who are heterozygous (carriers) for the mutation. Dental caries levels (high or low) and age in years are indicated below each subject assessed.
Figure 3Enamel microhardness study design. Image above A depicts the five tooth surfaces upon which enamel microhardness was tested. Image above B is a close-up of the occlusal surface. Image above C shows the appearance of an enamel specimen ready to be tested. Image below D shows the testing unit. Microhardness was tested at baseline, after artificial caries creation, and after exposure to a fluoridated solution (panels above E, F, and G. are schematic representations of the assessments).
Figure 4Summary of fine-mapping results. At the top, the fine-mapped region is highlighted on 14q24.3. Eight SNPs within or flanking ESRRB were associated with high caries experience.
Figure 5Odds ratios for over-representation of the T allele (rs1676303) in individuals with high dental caries. A. Meta-analysis with the five studied groups suggest an association between ESRRB rs1676303 and dental caries. B. When the two study groups with less dental caries are removed from analysis, the association between ESRRB rs1676303 and dental caries becomes stronger.
Statistical evidence of interaction between rs17074565 (a SNP predicted to disrupt a GR binding site) and SNPs in dental caries in Filipinos
| rs4903399 | 27 | 0.0000002 | C |
| rs6574293 | 27 | 0.00003 | G |
| rs1077430 | 13 | 0.21 | - |
| rs4903419 | 20 | 0.0000004 | A |
| rs2860216 | 27 | 0.05 | T |
| rs10132091 | 20 | 0.0000001 | T |
| rs1676303 | 16 | 0.0004 | T |
| rs745011 | 11 | 0.008 | T |