Literature DB >> 25022825

Artificial microRNA mediated gene silencing in plants: progress and perspectives.

Manish Tiwari1, Deepika Sharma, Prabodh Kumar Trivedi.   

Abstract

Homology based gene silencing has emerged as a convenient approach for repressing expression of genes in order to study their functions. For this purpose, several antisense or small interfering RNA based gene silencing techniques have been frequently employed in plant research. Artificial microRNAs (amiRNAs) mediated gene silencing represents one of such techniques which can utilize as a potential tool in functional genomics. Similar to microRNAs, amiRNAs are single-stranded, approximately 21 nt long, and designed by replacing the mature miRNA sequences of duplex within pre-miRNAs. These amiRNAs are processed via small RNA biogenesis and silencing machinery and deregulate target expression. Holding to various refinements, amiRNA technology offers several advantages over other gene silencing methods. This is a powerful and robust tool, and could be applied to unravel new insight of metabolic pathways and gene functions across the various disciplines as well as in translating observations for improving favourable traits in plants. This review highlights general background of small RNAs, improvements made in RNAi based gene silencing, implications of amiRNA in gene silencing, and describes future themes for improving value of this technology in plant science.

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Year:  2014        PMID: 25022825     DOI: 10.1007/s11103-014-0224-7

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  123 in total

Review 1.  Nomenclature and functions of RNA-directed RNA polymerases.

Authors:  Michael Wassenegger; Gabi Krczal
Journal:  Trends Plant Sci       Date:  2006-02-13       Impact factor: 18.313

Review 2.  Biogenesis of trans-acting siRNAs, endogenous secondary siRNAs in plants.

Authors:  Manabu Yoshikawa
Journal:  Genes Genet Syst       Date:  2013       Impact factor: 1.517

Review 3.  Roles of plant small RNAs in biotic stress responses.

Authors:  Virginia Ruiz-Ferrer; Olivier Voinnet
Journal:  Annu Rev Plant Biol       Date:  2009       Impact factor: 26.379

4.  Down-regulation of CBP80 gene expression as a strategy to engineer a drought-tolerant potato.

Authors:  Marcin Pieczynski; Waldemar Marczewski; Jacek Hennig; Jakub Dolata; Dawid Bielewicz; Paulina Piontek; Anna Wyrzykowska; Dominika Krusiewicz; Danuta Strzelczyk-Zyta; Dorota Konopka-Postupolska; Magdalena Krzeslowska; Artur Jarmolowski; Zofia Szweykowska-Kulinska
Journal:  Plant Biotechnol J       Date:  2012-12-11       Impact factor: 9.803

5.  Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley.

Authors:  Ingo Hein; Maria Barciszewska-Pacak; Katarina Hrubikova; Sandie Williamson; Malene Dinesen; Ida E Soenderby; Suresh Sundar; Artur Jarmolowski; Ken Shirasu; Christophe Lacomme
Journal:  Plant Physiol       Date:  2005-07-22       Impact factor: 8.340

6.  Artificial microRNA-mediated knockdown of pyruvate formate lyase (PFL1) provides evidence for an active 3-hydroxybutyrate production pathway in the green alga Chlamydomonas reinhardtii.

Authors:  Steven J Burgess; Gregory Tredwell; Attila Molnàr; Jacob G Bundy; Peter J Nixon
Journal:  J Biotechnol       Date:  2012-06-09       Impact factor: 3.307

7.  Expression of artificial microRNAs in tomato confers efficient and stable virus resistance in a cell-autonomous manner.

Authors:  Xiaohui Zhang; Hanxia Li; Junhong Zhang; Chanjuan Zhang; Pengjuan Gong; Khurram Ziaf; Fangming Xiao; Zhibiao Ye
Journal:  Transgenic Res       Date:  2010-09-14       Impact factor: 2.788

8.  MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Authors:  Noah Fahlgren; Sanjuro Jogdeo; Kristin D Kasschau; Christopher M Sullivan; Elisabeth J Chapman; Sascha Laubinger; Lisa M Smith; Mark Dasenko; Scott A Givan; Detlef Weigel; James C Carrington
Journal:  Plant Cell       Date:  2010-04-20       Impact factor: 11.277

9.  Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts.

Authors:  Xin Shun Ding; William L Schneider; Srinivasa Rao Chaluvadi; M A Rouf Mian; Richard S Nelson
Journal:  Mol Plant Microbe Interact       Date:  2006-11       Impact factor: 4.171

10.  Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).

Authors:  Yanfei Ding; Zhen Chen; Cheng Zhu
Journal:  J Exp Bot       Date:  2011-03-01       Impact factor: 6.992

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  42 in total

1.  Artificial miRNA-mediated down-regulation of two monolignoid biosynthetic genes (C3H and F5H) cause reduction in lignin content in jute.

Authors:  Farhana Shafrin; Sudhanshu Sekhar Das; Neeti Sanan-Mishra; Haseena Khan
Journal:  Plant Mol Biol       Date:  2015-10-09       Impact factor: 4.076

Review 2.  Dietary plant miRNAs as an augmented therapy: cross-kingdom gene regulation.

Authors:  Ritu Trivedi; Mehar Hasan Asif; Prabodh Kumar Trivedi
Journal:  RNA Biol       Date:  2018-12-10       Impact factor: 4.652

Review 3.  Antisense RNA: the new favorite in genetic research.

Authors:  Jian-Zhong Xu; Jun-Lan Zhang; Wei-Guo Zhang
Journal:  J Zhejiang Univ Sci B       Date:  2018 Oct.       Impact factor: 3.066

4.  Fast-forward generation of effective artificial small RNAs for enhanced antiviral defense in plants.

Authors:  Alberto Carbonell; James C Carrington; José-Antonio Daròs
Journal:  RNA Dis       Date:  2016-01-12

5.  An artificial miRNA as a new tool to silence and explore gene functions in apple.

Authors:  Aurélie Charrier; Emilie Vergne; Clément Joffrion; Andréa Richer; Nicolas Dousset; Elisabeth Chevreau
Journal:  Transgenic Res       Date:  2019-09-19       Impact factor: 2.788

Review 6.  Virus tolerance and recovery from viral induced-symptoms in plants are associated with transcriptome reprograming.

Authors:  Louis Bengyella; Sayanika D Waikhom; Farhahna Allie; Chrissie Rey
Journal:  Plant Mol Biol       Date:  2015-09-10       Impact factor: 4.076

7.  Utilization of microRNAs and their regulatory functions for improving biotic stress tolerance in tea plant [Camellia sinensis (L.) O. Kuntze].

Authors:  Anburaj Jeyaraj; Tamilselvi Elango; Xinghui Li; Guiyi Guo
Journal:  RNA Biol       Date:  2020-06-16       Impact factor: 4.652

Review 8.  The regulatory activities of microRNAs in non-vascular plants: a mini review.

Authors:  Sujay Paul; Luis Alberto Bravo Vázquez; Marilyn Márquez Nafarrate; Ana Isabel Gutiérrez Reséndiz; Aashish Srivastava; Ashutosh Sharma
Journal:  Planta       Date:  2021-08-23       Impact factor: 4.116

9.  Cell Wall Invertase Is Essential for Ovule Development through Sugar Signaling Rather Than Provision of Carbon Nutrients.

Authors:  Shengjin Liao; Lu Wang; Jun Li; Yong-Ling Ruan
Journal:  Plant Physiol       Date:  2020-04-24       Impact factor: 8.340

10.  Jasmonate responsive transcription factor WsMYC2 regulates the biosynthesis of triterpenoid withanolides and phytosterol via key pathway genes in Withania somnifera (L.) Dunal.

Authors:  Arti Sharma; Gulzar A Rather; Prashant Misra; Manoj K Dhar; Surrinder K Lattoo
Journal:  Plant Mol Biol       Date:  2019-05-14       Impact factor: 4.076

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