Literature DB >> 25020253

Automated phenotyping and advanced data mining exemplified in rats transgenic for Huntington's disease.

Yvonne K Urbach1, Kerstin A Raber1, Fabio Canneva1, Anne-C Plank1, Theresa Andreasson2, Henrik Ponten2, Johan Kullingsjö2, Huu Phuc Nguyen3, Olaf Riess3, Stephan von Hörsten4.   

Abstract

BACKGROUND: The need for improving throughput, validity, and reliability in the behavioral characterization of rodents may benefit from integrating automated intra-home-cage-screening systems allowing the simultaneous detection of multiple behavioral and physiological parameters in parallel. NEW
METHOD: To test this hypothesis, transgenic Huntington's disease (tgHD) rats were repeatedly screened within phenotyping home-cages (PhenoMaster and IntelliCage for rats), where spontaneous activity, feeding, drinking, temperature, and metabolic performance were continuously measured. Cognition and emotionality were evaluated within the same environment by means of operant learning procedures and refined analysis of the behavioral display under conditions of novelty. This investigator-independent approach was further correlated with behavioral display of the animals in classical behavioral assays. Multivariate analysis (MVA) including Principle Component Analysis (PCA) and Partial Least Squares Discriminant Analysis (PLS-DA) was used to explore correlation patterns of variables within and across the two genotypes.
RESULTS: The automated systems traced previously undetected aspects in the phenotype of tgHD rats (circadian activity, energy metabolism, rearing), and out of those spontaneous free rearing correlated with individual performance in the accelerod test. PCA revealed a segregation by genotype in juvenile tgHD rats that differed from adult animals, being further resolved by PLS-DA detecting "temperature" (juvenile) and "rearing" (adult) as phenotypic key variables in the tgHD model.
CONCLUSIONS: Intra-home-cage phenotyping in combination with MVA, is capable of characterizing a complex phenotype by detecting novel physiological and behavioral markers with high sensitivity and standardization using fewer human resources. A broader application of automated systems for large-scale screening is encouraged.
Copyright © 2014. Published by Elsevier B.V.

Entities:  

Keywords:  Automated phenotyping; Data mining; Huntington's disease; Transgenic rats

Mesh:

Substances:

Year:  2014        PMID: 25020253     DOI: 10.1016/j.jneumeth.2014.06.017

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  18 in total

1.  The BACHD Rat Model of Huntington Disease Shows Signs of Fronto-Striatal Dysfunction in Two Operant Conditioning Tests of Short-Term Memory.

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4.  Display of individuality in avoidance behavior and risk assessment of inbred mice.

Authors:  Torben Hager; René F Jansen; Anton W Pieneman; Suriya N Manivannan; Ilan Golani; Sophie van der Sluis; August B Smit; Matthijs Verhage; Oliver Stiedl
Journal:  Front Behav Neurosci       Date:  2014-09-16       Impact factor: 3.558

5.  Impaired Decision Making and Loss of Inhibitory-Control in a Rat Model of Huntington Disease.

Authors:  Nicole El Massioui; Charlotte Lamirault; Sara Yagüe; Najia Adjeroud; Daniel Garces; Alexis Maillard; Lucille Tallot; Libo Yu-Taeger; Olaf Riess; Philippe Allain; Huu Phuc Nguyen; Stephan von Hörsten; Valérie Doyère
Journal:  Front Behav Neurosci       Date:  2016-10-26       Impact factor: 3.558

6.  An Automated, Experimenter-Free Method for the Standardised, Operant Cognitive Testing of Rats.

Authors:  Marion Rivalan; Humaira Munawar; Anna Fuchs; York Winter
Journal:  PLoS One       Date:  2017-01-06       Impact factor: 3.240

7.  Early Alterations in Operant Performance and Prominent Huntingtin Aggregation in a Congenic F344 Rat Line of the Classical CAGn51trunc Model of Huntington Disease.

Authors:  Anne-Christine Plank; Fabio Canneva; Kerstin A Raber; Yvonne K Urbach; Julia Dobner; Maja Puchades; Jan G Bjaalie; Clarissa Gillmann; Tobias Bäuerle; Olaf Riess; Hoa H P Nguyen; Stephan von Hörsten
Journal:  Front Neurosci       Date:  2018-01-25       Impact factor: 4.677

8.  Automated recording of home cage activity and temperature of individual rats housed in social groups: The Rodent Big Brother project.

Authors:  William S Redfern; Karen Tse; Claire Grant; Amy Keerie; David J Simpson; John C Pedersen; Victoria Rimmer; Lauren Leslie; Stephanie K Klein; Natasha A Karp; Rowland Sillito; Agis Chartsias; Tim Lukins; James Heward; Catherine Vickers; Kathryn Chapman; J Douglas Armstrong
Journal:  PLoS One       Date:  2017-09-06       Impact factor: 3.240

9.  Further investigation of phenotypes and confounding factors of progressive ratio performance and feeding behavior in the BACHD rat model of Huntington disease.

Authors:  Erik Karl Håkan Clemensson; Laura Emily Clemensson; Benedikt Fabry; Stefanie Flunkert; Olaf Riess; Robert Wronski; Huu Phuc Nguyen
Journal:  PLoS One       Date:  2017-03-08       Impact factor: 3.240

Review 10.  The IntelliCage System: A Review of Its Utility as a Novel Behavioral Platform for a Rodent Model of Substance Use Disorder.

Authors:  Ismail Nurul Iman; Nurul Aiman Mohd Yusof; Ummi Nasrah Talib; Nur Aimi Zawami Ahmad; Anwar Norazit; Jaya Kumar; Muhammad Zulfadli Mehat; Nanthini Jayabalan; Sangu Muthuraju; Marzena Stefaniuk; Leszek Kaczmarek; Mustapha Muzaimi
Journal:  Front Behav Neurosci       Date:  2021-06-04       Impact factor: 3.558

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