Literature DB >> 25019810

Suppression and enhancement of transcriptional noise by DNA looping.

Jose M G Vilar1, Leonor Saiz2.   

Abstract

DNA looping has been observed to enhance and suppress transcriptional noise but it is uncertain which of these two opposite effects is to be expected for given conditions. Here, we derive analytical expressions for the main quantifiers of transcriptional noise in terms of the molecular parameters and elucidate the role of DNA looping. Our results rationalize paradoxical experimental observations and provide the first quantitative explanation of landmark individual-cell measurements at the single molecule level on the classical lac operon genetic system [Choi, L. Cai, K. Frieda, and X. S. Xie, Science 322, 442 (2008)].

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Year:  2014        PMID: 25019810     DOI: 10.1103/PhysRevE.89.062703

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

1.  Analytical Expressions and Physics for Single-Cell mRNA Distributions of the lac Operon of E. coli.

Authors:  Krishna Choudhary; Atul Narang
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

2.  Anticipating response function in gene regulatory networks.

Authors:  Pankaj Gautam; Sudipta Kumar Sinha
Journal:  J R Soc Interface       Date:  2021-06-02       Impact factor: 4.293

3.  Ranking of Reactions Based on Sensitivity of Protein Noise Depends on the Choice of Noise Measure.

Authors:  Sucheta Gokhale; Chetan Gadgil
Journal:  PLoS One       Date:  2015-12-01       Impact factor: 3.240

4.  Effects of promoter leakage on dynamics of gene expression.

Authors:  Lifang Huang; Zhanjiang Yuan; Peijiang Liu; Tianshou Zhou
Journal:  BMC Syst Biol       Date:  2015-03-21

5.  Effect of Interaction between Chromatin Loops on Cell-to-Cell Variability in Gene Expression.

Authors:  Tuoqi Liu; Jiajun Zhang; Tianshou Zhou
Journal:  PLoS Comput Biol       Date:  2016-05-06       Impact factor: 4.475

  5 in total

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