| Literature DB >> 25013766 |
Noor Haslina Masstor1, Abdullah Samat1, Shukor Md Nor1, Badrul Munir Md-Zain1.
Abstract
Chiloscyllium, commonly called bamboo shark, can be found inhabiting the waters of the Indo-West Pacific around East Asian countries such as Malaysia, Myanmar, Thailand, Singapore, and Indonesia. The International Union for Conservation of Nature (IUCN) Red List has categorized them as nearly threatened sharks out of their declining population status due to overexploitation. A molecular study was carried out to portray the systematic relationships within Chiloscyllium species using 12S rRNA and cytochrome b gene sequences. Maximum parsimony and Bayesian were used to reconstruct their phylogeny trees. A total of 381 bp sequences' lengths were successfully aligned in the 12S rRNA region, with 41 bp sites being parsimony-informative. In the cytochrome b region, a total of 1120 bp sites were aligned, with 352 parsimony-informative characters. All analyses yield phylogeny trees on which C. indicum has close relationships with C. plagiosum. C. punctatum is sister taxon to both C. indicum and C. plagiosum while C. griseum and C. hasseltii formed their own clade as sister taxa. These Chiloscyllium classifications can be supported by some morphological characters (lateral dermal ridges on the body, coloring patterns, and appearance of hypobranchials and basibranchial plate) that can clearly be used to differentiate each species.Entities:
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Year: 2014 PMID: 25013766 PMCID: PMC4071782 DOI: 10.1155/2014/213896
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Sampling location of bamboo sharks.
Details of the samples included in the study.
| Number | Species | Species code | Common name | Type of sample | Places of sampling |
|---|---|---|---|---|---|
| 1 |
|
| Slender bamboo shark | Tissue | Mersing, Johor |
| 2 |
|
| Slender bamboo shark | Tissue | Mersing, Johor |
| 3 |
|
| Slender bamboo shark | Tissue | Mersing, Johor |
| 4 |
|
| Slender bamboo shark | Tissue | Mersing, Johor |
| 5 |
|
| Grey bamboo shark | Tissue | Mersing, Johor |
| 6 |
|
| Grey bamboo shark | Tissue | Mersing, Johor |
| 7 |
|
| Slender bamboo shark | Tissue | Pulau Tinggi, Johor |
| 8 |
|
| Slender bamboo shark | Tissue | Pulau Tinggi, Johor |
| 9 |
|
| Slender bamboo shark | Tissue | Pulau Tinggi, Johor |
| 10 |
|
| Grey carpet shark | Tissue | Pulau Tinggi, Johor |
| 11 |
|
| Indonesian bamboo shark | Tissue | Pulau Pinang |
| 12 |
|
| Grey carpet shark | Tissue | Pulau Pinang |
| 13 |
|
| Slender bamboo shark | Tissue | Pulau Pinang |
| 14 |
|
| Slender bamboo shark | Tissue | Pulau Pinang |
| 15 |
|
| Indonesian bamboo shark | Tissue | Pulau Pinang |
| 16 |
|
| Indonesian bamboo shark | Tissue | Pulau Pinang |
| 17 |
|
| Indonesian bamboo shark | Tissue | Pulau Pinang |
| 18 |
|
| Grey carpet shark | Tissue | Mersing, Johor |
| 19 |
|
| Grey bamboo shark | Tissue | Kuantan, Pahang |
| 20 |
|
| Grey carpet shark | Tissue | Kuantan, Pahang |
| 21 |
|
| Grey bamboo shark | Tissue | Kuantan, Pahang |
| 22 |
|
| Grey bamboo shark | Tissue | K. Terengganu, Terengganu |
| 23 |
|
| Grey bamboo shark | Tissue | Pekan, Pahang |
| 24 |
|
| Grey bamboo shark | Tissue | Pekan, Pahang |
| 25 |
| Zebra shark | Tissue | Pekan, Pahang | |
| 26 |
| AY830745.1 | Nurse shark | GenBank | |
| 27 |
| AM265573.1 | Whale shark | GenBank | |
| 28 |
| JQ434458.1 | Grey bamboo shark | GenBank | |
| 29 |
| NC_016686.1 | Grey carpet shark | GenBank | |
| 30 |
| FJ853422.1 | Whitespotted bamboo shark | GenBank | |
| 31 |
| NC_012570.1 | Whitespotted bamboo shark | GenBank |
Figure 2Maximum parsimony cladogram of partial 12S rRNA gene sequences and Bayesian posterior probability tree. Italic numbers at the branches stand for bootstrap values higher than 50% of 1000 replications and bold numbers stand for Bayesian posterior probability value.
Figure 3Maximum parsimony cladogram of partial cytochrome b gene sequences and Bayesian posterior probability tree. Italic numbers at the branches stand for bootstrap values higher than 50% of 1000 replications and bold numbers stand for Bayesian posterior probability value.
Figure 4Inferred phylogeny of Chiloscyllium species, a majority rule consensus tree based on maximum parsimony and Bayesian analysis. Italic numbers at the branches stand for bootstrap values higher than 50% of 1000 replications and bold numbers stand for Bayesian posterior probability value.