Literature DB >> 25012975

Base excision repair in Archaea: back to the future in DNA repair.

Stefano Grasso1, Gianluca Tell2.   

Abstract

Together with Bacteria and Eukarya, Archaea represents one of the three domain of life. In contrast with the morphological difference existing between Archaea and Eukarya, these two domains are closely related. Phylogenetic analyses confirm this evolutionary relationship showing that most of the proteins involved in DNA transcription and replication are highly conserved. On the contrary, information is scanty about DNA repair pathways and their mechanisms. In the present review the most important proteins involved in base excision repair, namely glycosylases, AP lyases, AP endonucleases, polymerases, sliding clamps, flap endonucleases, and ligases, will be discussed and compared with bacterial and eukaryotic ones. Finally, possible applications and future perspectives derived from studies on Archaea and their repair pathways, will be taken into account.
Copyright © 2014 Elsevier B.V. All rights reserved.

Keywords:  AP endonuclease; Archaea; Base excision repair; DNA repair; Glycosylase

Mesh:

Substances:

Year:  2014        PMID: 25012975     DOI: 10.1016/j.dnarep.2014.05.006

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  12 in total

1.  Lesion-Induced Mutation in the Hyperthermophilic Archaeon Sulfolobus acidocaldarius and Its Avoidance by the Y-Family DNA Polymerase Dbh.

Authors:  Cynthia J Sakofsky; Dennis W Grogan
Journal:  Genetics       Date:  2015-07-29       Impact factor: 4.562

2.  Oxidative DNA-protein crosslinks formed in mammalian cells by abasic site lyases involved in DNA repair.

Authors:  Jason L Quiñones; Upasna Thapar; Samuel H Wilson; Dale A Ramsden; Bruce Demple
Journal:  DNA Repair (Amst)       Date:  2020-01-09

Review 3.  Understanding DNA Repair in Hyperthermophilic Archaea: Persistent Gaps and Other Reasons to Focus on the Fork.

Authors:  Dennis W Grogan
Journal:  Archaea       Date:  2015-06-04       Impact factor: 3.273

4.  Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome.

Authors:  Sophie S Abby; Michael Melcher; Melina Kerou; Mart Krupovic; Michaela Stieglmeier; Claudia Rossel; Kevin Pfeifer; Christa Schleper
Journal:  Front Microbiol       Date:  2018-01-26       Impact factor: 5.640

Review 5.  New Insights Into DNA Repair Revealed by NucS Endonucleases From Hyperthermophilic Archaea.

Authors:  Likui Zhang; Donghao Jiang; Mai Wu; Zhihui Yang; Philippe M Oger
Journal:  Front Microbiol       Date:  2020-07-02       Impact factor: 5.640

Review 6.  The Similarities between Human Mitochondria and Bacteria in the Context of Structure, Genome, and Base Excision Repair System.

Authors:  Karolina Boguszewska; Michał Szewczuk; Julia Kaźmierczak-Barańska; Bolesław T Karwowski
Journal:  Molecules       Date:  2020-06-21       Impact factor: 4.411

7.  Biochemical reconstitution and genetic characterization of the major oxidative damage base excision DNA repair pathway in Thermococcus kodakarensis.

Authors:  Alexandra M Gehring; Kelly M Zatopek; Brett W Burkhart; Vladimir Potapov; Thomas J Santangelo; Andrew F Gardner
Journal:  DNA Repair (Amst)       Date:  2019-12-05

8.  Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea.

Authors:  Sonoko Ishino; Yuki Nishi; Soichiro Oda; Takashi Uemori; Takehiro Sagara; Nariaki Takatsu; Takeshi Yamagami; Tsuyoshi Shirai; Yoshizumi Ishino
Journal:  Nucleic Acids Res       Date:  2016-03-21       Impact factor: 16.971

9.  NQO-Induced DNA-Less Cell Formation Is Associated with Chromatin Protein Degradation and Dependent on A0A1-ATPase in Sulfolobus.

Authors:  Wenyuan Han; Yanqun Xu; Xu Feng; Yun X Liang; Li Huang; Yulong Shen; Qunxin She
Journal:  Front Microbiol       Date:  2017-08-14       Impact factor: 5.640

10.  The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG.

Authors:  Miyako Shiraishi; Sonoko Ishino; Matthew Heffernan; Isaac Cann; Yoshizumi Ishino
Journal:  Sci Rep       Date:  2018-10-25       Impact factor: 4.379

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