| Literature DB >> 25011617 |
Katarina Wallménius, Christos Barboutis, Thord Fransson, Thomas G T Jaenson, Per-Eric Lindgren, Fredrik Nyström, Björn Olsen, Erik Salaneck, Kenneth Nilsson1.
Abstract
BACKGROUND: A few billion birds migrate annually between their breeding grounds in Europe and their wintering grounds in Africa. Many bird species are tick-infested, and as a result of their innate migratory behavior, they contribute significantly to the geographic distribution of pathogens, including spotted fever rickettsiae. The aim of the present study was to characterize, in samples from two consecutive years, the potential role of migrant birds captured in Europe as disseminators of Rickettsia-infected ticks.Entities:
Mesh:
Year: 2014 PMID: 25011617 PMCID: PMC4230250 DOI: 10.1186/1756-3305-7-318
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Details of primers, probe, product sizes and gene positions in PCR assays and sequencing of rickettsial genes
| CS-F | TCG CAA ATG TTC ACG GTA CT | 74 | |
| | CS-R | TCG TGC ATT TCT TTC CAT TGT G | |
| | CS-P | 6-FAM-TGC AAT AGC AAG AAC CGT | Probe |
| | | AGG CTG GAT G--BBQ-1 | |
| Rc.rompB.4362p | GTC AGC GTT ACT TCT TCG ATG C | 475 | |
| | Rc.rompB.4,836n | CCG TAC TCC ATC TTA GCA TCA G | |
| | Rc.rompB.4,496p | CCA ATG GCA GGA CTT AGC TAC T | 267 |
| | Rc.rompB.4,762n | AGG CTG GCT GAT ACA CGG AGT AA | |
| 17 kDa | Rr17kDa.61p | GCT CTT GCA ACT TCT ATG TT | 434 |
| | Rr17kDa.492n | CAT TGT TCG TCA GGT TGG CG | |
| Rr 190.70 F | ATG GCG AAT ATT TCT CCA AAA | 632 | |
| | Rr 190.701R | GTT CCG TTA ATG GCA GCA TCT | |
| RH314 | AAA CAG GTT GCT CAT CAT TC | 857 | |
| | CSF-R | AAG TAC CGT GAA CAT TTG CGA | |
| | CS-Ric-R | CAG TGA ACA TTT GCG ACG GTA | 852 |
| | CS535d | GCA ATG TCT TAT AAA TAT TC | Sequencing |
| Primer |
Birds infested by Rickettsia spp.-infected ticks
| | | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| | | ||||||||||
| | | ||||||||||
| Great Reed Warbler | | | | | 81 (11) | 2 (3) | | | 11 | 197 | |
| Sedge Warbler | 102 (16) | 5 (6) | | | 15 (23) | 4 (7) | | | 39 | 459 | |
| Reed Warbler | 3 (4) | 1 (1) | | | 0 (2) | 0 (1) | | | 6 | 24 | |
| Tree Pipit | 1 (4) | 1 (4) | 3 (7) | 23 (3) | 2 (5) | 2 (5) | | | 16 | 406 | |
| Eurasian Nightjar | | | | | 2 (2) | 1 (1) | | | 2 | 25 | |
| European Greenfinch | | | | | 14 (4) | 1 (1) | | | 4 | 21 | |
| Siskin | | | | | 15 (1) | 1 (1) | | | 1 | 3 | |
| European Robin | 2 (4) | 1 (1) | | | 0 (12) | 0 (6) | | | 16 | 127 | |
| Collard Flycatcher | 3 (3) | 1 (1) | | | 0 (3) | 0 (2) | | | 6 | 174 | |
| European Pied Flycatcher | 2 (7) | 2 (7) | 20 (44) | 15 (31) | 0 (8) | 0 (4) | 56 (31) | 4 (22) | 59 | 2008 | |
| Icterine Warbler | 2 (3) | 1 (2*) | 1 (1*) | 1 (1*) | 1 (1) | 1 (1) | 0 (2) | 0 (1) | 7 | 475 | |
| Olivaceous Warbler | 1 (1) | 1 (1) | | | 1 (1) | 1 (1) | | | 2 | 46 | |
| Woodchat Shrike | 20 (25) | 4 (5) | 3 (3) | 2 (2) | 12 ± 1 (25) | 8 (11) | | | 53 | 122 | |
| Common Nightingale | 12 (15) | 3 (6*) | 0 (1) | 0 (1) | 11 (20) | 4 (7) | | | 36 | 319 | |
| Yellow Wagtail | 9 (9) | 1 (1) | | | 1 (2) | 1 (1) | | | 11 | 9 | |
| Spotted Flycatcher | | | 2 (2) | 2 (2) | 1 (1) | 1 (1) | 3 (4) | 3 (4) | 7 | 1187 | |
| Wheatear | | | | | 2 (2) | 2 (2) | 13 (17) | 4 (4) | 19 | 82 | |
| Golden Oriole | 0 (2) | 0 (2) | 4 (9) | 3 (4) | 37 (6) | 3 (5) | 0 (1) | 0 (1) | 18 | 293 | |
| Common Redstart | 5 (10) | 3 (6) | 3 (10) | 3 (6) | 108 (24) | 10 (15) | 1 (7) | 1 (4) | 51 | 386 | |
| Eastern Bonelli's Warbler | | | | | 3 (7) | 3 (4) | | | 7 | 33 | |
| Wood Warbler | 1 (5) | 1 (4) | 6 (13) | 5 (12) | 2 (5) | 2 (5) | 3 (10) | 3 (9) | 33 | 1238 | |
| Willow Warbler | 1 (2) | 1 (2) | 1 (1) | 1 (1) | | | 0 (1) | 0 (1) | 4 | 738 | |
| Whinchat | 0 (2) | 0 (2) | 16 (73) | 13 (33) | 1 (3) | 1 (2) | 23 (58) | 14 (34) | 135 | 1472 | |
| Garden Warbler | 29 (3) | 2 (3) | 0 (3) | 0 (1) | 3 (4) | 3 (4) | 1 (3) | 1 (3) | 13 | 2190 | |
| Common Whitethroat | 10 (16) | 6 (8) | 43 (70) | 24 (33) | 8 (13) | 6 (9) | 16 (24) | 10 (17) | 123 | 1244 | |
| Song Thrush | 4 (5) | 1 (1) | | | 710 (13) | 2 (2) | | | 18 | 23 | |
| Eurasian Hoopoe | | | | | 2 (2) | 2 (2) | | | 2 | 18 | |
| Unknown species | | 0 (1) | 0 (1) | 1 (2) | 1 (2) | | | | | 3 | 3 |
| 27 species | 88 (137) | 36 (65) | 103 (239) | 72 (130) | 97 ± 1 (200) | 61 (103) | 65 (158) | 40 (100) | 353 ± 1 (734) | 13 322** | |
Of the infected ticks 96% carried Rickettsia aeschlimannii, marked are those ticks who carried other rickettsia species, see Tablee 5 for more details. 1. One Rickettsia sp. (84748).
2. Two Rickettsia sp. (84607 and 84609) 3. One Rickettsia sp. (84154) from an Ixodes frontalis adult female 4. One probable R. africae 5. One R. africae 6. One possible R. monacensis (113618) from an Ixodes frontalis 7. One Rickettsia sp. (84751) 8. One R. africae 9. One Rickettsia sp. (84594) from a Haemaphysalis sp. nymph 10. Four R. africae and one probable R. africae *One bird with uncertain species definition. **Bird species without ticks are not included.
Outcome of Blast hit comparison in determining the identity of amplified sequences
| 84154 | 219/222 | Candidatus | nd | | nd | | nd | |
| | | | | | | | | |
| | | | | | | | | |
| | | Uncultured Rickettsia sp. clone CsfC2 [EU407140] | | | | | | |
| 84594 | 424/431 | Rickettsia sp. T170-B [JQ727680] | 394/394 | nd | | nd | | |
| | | | Rickettsia sp. RpA4 | | | | | |
| | | Rickettsia sp. IG-1 [EF219461] | | Rickettsia sp. ARANHA | | | | |
| | | | | Candidatus | | | | |
| 84607 | 428/431 | 392/392 | Candidatus | nd | | nd | | |
| | | 392/394 | | | | | ||
| | | | | | | | ||
| | | | | | | | ||
| | | Rickettsia sp. BJ-90 [AY331393] | | | | | | |
| | | | | Rickettsia sp. NOD [EU567178] | | | | |
| 84609 | 220/222 | 392/392 | Candidatus | nd | | nd | | |
| | | 392/394 | | | | | ||
| | | | | | | | ||
| | | | | | | | ||
| | | | | | | | ||
| | | | Rickettsia sp. NOD [EU567178] | | | | | |
| | | | | | | | | |
| | | Rickettsia sp. BJ-90 [AY331393] | | | | | | |
| | | Uncultured Rickettsia sp. clone B3[DQ019321] | | | | | | |
| 84748 | 185/187 | Candidatus | 392/392 | Rickettsia sp. Torishima-CC1[AB242434] | 734/734 | nd | | |
| | | | 387/387** | Rickettsia sp. Scc31 [DQ105801] | | | | |
| | | | 386/386** | | | | | |
| | | | 382/382** | Candidatus | | | | |
| 84751 | 427/431 | Rickettsia sp. T170 [JQ727680] | 394/394 | Rickettsia sp. LON-13 [AB516961] | 791/791 | Rickettsia sp. Mie180 [JQ697958] | 584/587 | Rickettsia sp. HlR/D91 [KC888951] |
| | | | Rickettsia sp. LON-2 [AB516960] | | Rickettsia sp. LON-13 [AB516964] | 583/587 | Rickettsia sp. FUJ98 [AF169629] | |
| | | | | | | 485/488** | Rickettsia sp. LON-13 [AB516963] | |
| | | | | Rickettsia sp. Hf151 [AB114816] | | | | |
| | | | | Rickettsia sp. Hl550 [AB114805] | | | | |
| 113618 | 222/222 | nd | nd | nd |
*Two examples **The deponated sequence at NCBI GenBank is shorter than our sequence.
Tick species and rate of infection with spp. per stage of development
| Larva | 73 | 11 | 71 | ||
| | Nymph | 4 | 92 | ||
| Larva | | | 13 | ||
| | Nymph | 7 | | | |
| Nymph | 1 | | | ||
| Larva | | | | ||
| | Nymph | 4 | | 14 | |
| | Adult (female) | | | 15 | |
| Larva | | | | ||
| | Nymph | | | | |
| Nymph | | | | ||
| Nymph | 1 | | 16 | ||
| Nymph | | | | ||
| Unididentifable stage stage | 5 | 1 | 97 | ||
*One larva was pooled with one nymph, **One pool consisted of two nymphs and one larva. 1. One Rickettsia sp. (84751) and six probable R. aeschlimannii, 2. Two Rickettsia sp. (84748 and 84607) and seven probable R. aeschlimannii 3. One Rickettsia sp. (84609), 4. One possible R. monacensis (113618), 5. One Rickettsia sp. (84154) 6. One Rickettsia sp. (84594), 7. Two probable R. africae and seven probable R. aeschlimannii.
Ticks infected with other spp. than
| Capri 2009 | Tree Pipit | Female | 84154 | ||
| Antikythira 2009 | Garden warbler | Nymph | 84594 | ||
| | Sedge warbler | Nymph | 84607 | ||
| | | Larva | 84609 | ||
| Capri 2010 | European pied flycatcher | Nymph | Possibly | 113618 | |
| Antikythira 2010 | Common redstart | Larva | | ||
| | Song thrush | Nymph | | ||
| | | Nymph | | ||
| | | Nymph | | ||
| | Eurasian siskin | Nymph | | ||
| | Song thrush | No photo | | | |
| | | No photo | | | |
| | European greenfinch | No photo | | | |
| | Great reed warbler | Nymph | 84748 | ||
| | Golden oriole | Larva | 84751 | ||
*Sequence data for these samples are displayed in Table 6.
Prevalence, collection site and year of species in PCR-positive ticks
| | |||||
|---|---|---|---|---|---|
| 82 | 80 ± 1 | 99 | 57 | 318 | |
| Probable | 3 | 7 | 3 | 7 | 20 |
| | 6 | | | 6 | |
| Probable | | 2 | | | 2 |
| 3 | 1 | 1 | | 5 | |
| Possible | | | | 1 | 1 |
| Possible | | 1 | | | 1 |
| 88 | 97 ± 1 | 103 | 65 | | |
Figure 1Tick-distribution maps. Areas from where Hyalomma marginatum (green) and Hyalomma rufipes (red) have been reported. Based on tick maps from the “European centre for disease prevention and control” and Walker et al. [34,35].
Figure 2Illustration of the wintering and breeding areas and migration directions of five bird species. Breeding (green) and wintering (light brown) areas for some bird species included in the study, based on Cramp and Perrins [36-38]. Dark green indicates areas where birds are present all year around. Arrows show the main direction of movements from wintering areas towards breeding areas during spring migration.Song Thrush Turdus philomelos. The locations of Capri (C) and Antikythira (A) bird observatories in Italy and Greece, respectively, are shown by white squares.
Figure 3Illustration of the wintering and breeding areas and migration directions of five bird species. Breeding (green) and wintering (light brown) areas for some bird species included in the study, based on Cramp and Perrins [36-38]. Arrows show the main direction of movements from wintering areas towards breeding areas during spring migration.Sedge Warbler Acrocephalus schoenobaenus. The locations of Capri (C) and Antikythira (A) bird observatories in Italy and Greece, respectively, are shown by white squares.
Figure 4Illustration of the wintering and breeding areas and migration directions of five bird species. Breeding (green) and wintering (light brown) areas for some bird species included in the study, based on Cramp and Perrins [36-38]. Arrows show the main direction of movements from wintering areas towards breeding areas during spring migration. Great Reed Warbler A. arundinaceus. The locations of Capri (C) and Antikythira (A) bird observatories in Italy and Greece, respectively, are shown by white squares.
Figure 5Illustration of the wintering and breeding areas and migration directions of five bird species. Breeding (green) and wintering (light brown) areas for some bird species included in the study, based on Cramp and Perrins [36-38]. Arrows show the main direction of movements from wintering areas towards breeding areas during spring migration. Pied Flycatcher Ficedula hypoleuca. The locations of Capri (C) and Antikythira (A) bird observatories in Italy and Greece, respectively, are shown by white squares.
Figure 6Illustration of the wintering and breeding areas and migration directions of five bird species. Breeding (green) and wintering (light brown) areas for some bird species included in the study, based on Cramp and Perrins [36-38]. Arrows show the main direction of movements from wintering areas towards breeding areas during spring migration. Woodchat Shrike Lanius senator. The locations of Capri (C) and Antikythira (A) bird observatories in Italy and Greece, respectively, are shown by white squares.