Literature DB >> 25004951

Determination of mean and Gaussian curvatures of highly curved asymmetric lipid bilayers: the case study of the influence of cholesterol on the membrane shape.

S O Yesylevskyy1, C Ramseyer.   

Abstract

Although molecular dynamics simulations of highly curved lipid bilayers have become increasingly popular in recent years, there is no simple and general method of computing the shape and curvature of the bilayer, which is bent arbitrarily in three dimensions. In this work we propose a method, which allows computing local normal, mean and Gaussian curvatures at any point of an arbitrarily curved lipid membrane using molecular dynamics trajectories. The method is based on the analysis of local membrane patches and is applicable to the membranes of any shape and topology - bilayers, vesicles, micelles, bicelles, etc. The method is applied to a highly curved asymmetric DOPC/DOPS lipid bilayer simulated by means of extended coarse-grained molecular dynamics simulations. It is shown that addition of cholesterol makes the membrane more topologically heterogeneous by increasing the content of highly curved regions with either saddle-like or sphere-like topology. The topology of the DOPS lipid domains is more sensitive to the addition of cholesterol than DOPC domains.

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Year:  2014        PMID: 25004951     DOI: 10.1039/c4cp01544d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

1.  The influence of curvature on the properties of the plasma membrane. Insights from atomistic molecular dynamics simulations.

Authors:  Semen O Yesylevskyy; Timothée Rivel; Christophe Ramseyer
Journal:  Sci Rep       Date:  2017-11-22       Impact factor: 4.379

2.  The asymmetry of plasma membranes and their cholesterol content influence the uptake of cisplatin.

Authors:  Timothée Rivel; Christophe Ramseyer; Semen Yesylevskyy
Journal:  Sci Rep       Date:  2019-04-04       Impact factor: 4.379

3.  Curvature increases permeability of the plasma membrane for ions, water and the anti-cancer drugs cisplatin and gemcitabine.

Authors:  Semen Yesylevskyy; Timothée Rivel; Christophe Ramseyer
Journal:  Sci Rep       Date:  2019-11-20       Impact factor: 4.379

4.  Amphiphilic anti-SARS-CoV-2 drug remdesivir incorporates into the lipid bilayer and nerve terminal membranes influencing excitatory and inhibitory neurotransmission.

Authors:  Natalia Krisanova; Natalia Pozdnyakova; Artem Pastukhov; Marina Dudarenko; Oleg Shatursky; Olena Gnatyuk; Uliana Afonina; Kyrylo Pyrshev; Galina Dovbeshko; Semen Yesylevskyy; Tatiana Borisova
Journal:  Biochim Biophys Acta Biomembr       Date:  2022-04-22       Impact factor: 4.019

Review 5.  Molecular Dynamics Simulations of Curved Lipid Membranes.

Authors:  Andreas Haahr Larsen
Journal:  Int J Mol Sci       Date:  2022-07-22       Impact factor: 6.208

6.  Pytim: A python package for the interfacial analysis of molecular simulations.

Authors:  Marcello Sega; György Hantal; Balázs Fábián; Pál Jedlovszky
Journal:  J Comput Chem       Date:  2018-10-10       Impact factor: 3.376

  6 in total

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