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Literature DB >> 25003305

Automatic zebrafish heartbeat detection and analysis for zebrafish embryos.

Christian Pylatiuk¹, Daniela Sanchez, Ralf Mikut, Rüdiger Alshut, Markus Reischl, Sofia Hirth, Wolfgang Rottbauer, Steffen Just.

Abstract

A fully automatic detection and analysis method of heartbeats in videos of nonfixed and nonanesthetized zebrafish embryos is presented. This method reduces the manual workload and time needed for preparation and imaging of the zebrafish embryos, as well as for evaluating heartbeat parameters such as frequency, beat-to-beat intervals, and arrhythmicity. The method is validated by a comparison of the results from automatic and manual detection of the heart rates of wild-type zebrafish embryos 36-120 h postfertilization and of embryonic hearts with bradycardia and pauses in the cardiac contraction.

Entities: Disease Species

Mesh：

Year: 2014 PMID： 25003305 PMCID： PMC4108935 DOI： 10.1089/zeb.2014.1002

Source DB: PubMed Journal: Zebrafish ISSN： 1545-8547 Impact factor: 1.985

19 in total

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Journal: Nat Rev Drug Discov Date: 2005-01 Impact factor: 84.694

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Journal: Circulation Date: 2007-03-19 Impact factor: 29.690

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Journal: Circulation Date: 1996-03-01 Impact factor: 29.690

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Authors: David J Milan; Travis A Peterson; Jeremy N Ruskin; Randall T Peterson; Calum A MacRae
Journal: Circulation Date: 2003-03-18 Impact factor: 29.690

8. A new method for detection and quantification of heartbeat parameters in Drosophila, zebrafish, and embryonic mouse hearts.

Authors: Martin Fink; Carles Callol-Massot; Angela Chu; Pilar Ruiz-Lozano; Juan Carlos Izpisua Belmonte; Wayne Giles; Rolf Bodmer; Karen Ocorr
Journal: Biotechniques Date: 2009-02 Impact factor: 1.993

9. Optimisation of embryonic and larval ECG measurement in zebrafish for quantifying the effect of QT prolonging drugs.

Authors: Sundeep Singh Dhillon; Eva Dóró; István Magyary; Stuart Egginton; Attila Sík; Ferenc Müller
Journal: PLoS One Date: 2013-04-08 Impact factor: 3.240

10. Islet1 is a direct transcriptional target of the homeodomain transcription factor Shox2 and rescues the Shox2-mediated bradycardia.

Authors: Sandra Hoffmann; Ina M Berger; Anne Glaser; Claire Bacon; Li Li; Norbert Gretz; Herbert Steinbeisser; Wolfgang Rottbauer; Steffen Just; Gudrun Rappold
Journal: Basic Res Cardiol Date: 2013-03-01 Impact factor: 17.165

18 in total

1. Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[a]pyrene in zebrafish.

Authors: Andrea L Knecht; Lisa Truong; Skylar W Marvel; David M Reif; Abraham Garcia; Catherine Lu; Michael T Simonich; Justin G Teeguarden; Robert L Tanguay
Journal: Toxicol Appl Pharmacol Date: 2017-06-03 Impact factor: 4.219

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Authors: Juyoung Shim; Lisa M Weatherly; Richard H Luc; Maxwell T Dorman; Andy Neilson; Ryan Ng; Carol H Kim; Paul J Millard; Julie A Gosse
Journal: J Appl Toxicol Date: 2016-03-28 Impact factor: 3.446

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Authors: Mark Schutera; Thomas Dickmeis; Marina Mione; Ravindra Peravali; Daniel Marcato; Markus Reischl; Ralf Mikut; Christian Pylatiuk
Journal: Bioengineered Date: 2016-07-03 Impact factor: 3.269

4. Zebrafish larvae heartbeat detection from body deformation in low resolution and low frequency video.

Authors: Qi Xing; Victor Huynh; Thales Guimaraes Parolari; Claudia Vianna Maurer-Morelli; Nathalia Peixoto; Qi Wei
Journal: Med Biol Eng Comput Date: 2018-07-02 Impact factor: 2.602

Review 5. Genetics of Cardiovascular Disease: Fishing for Causality.

Authors: Christoph Paone; Federica Diofano; Deung-Dae Park; Wolfgang Rottbauer; Steffen Just
Journal: Front Cardiovasc Med Date: 2018-06-01

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Authors: Petrus J Steenbergen; Jana Heigwer; Gunjan Pandey; Burkhard Tönshoff; Jochen Gehrig; Jens H Westhoff
Journal: Cells Date: 2020-05-20 Impact factor: 6.600

7. Scale-up approach for supercritical fluid extraction with ethanol-water modified carbon dioxide on Phyllanthus niruri for safe enriched herbal extracts.

Authors: Norsyamimi Hassim; Masturah Markom; Masli Irwan Rosli; Shuhaida Harun
Journal: Sci Rep Date: 2021-08-04 Impact factor: 4.379