Literature DB >> 25002087

Viroids: survivors from the RNA world?

Ricardo Flores1, Selma Gago-Zachert, Pedro Serra, Rafael Sanjuán, Santiago F Elena.   

Abstract

Because RNA can be a carrier of genetic information and a biocatalyst, there is a consensus that it emerged before DNA and proteins, which eventually assumed these roles and relegated RNA to intermediate functions. If such a scenario--the so-called RNA world--existed, we might hope to find its relics in our present world. The properties of viroids that make them candidates for being survivors of the RNA world include those expected for primitive RNA replicons: (a) small size imposed by error-prone replication, (b) high G + C content to increase replication fidelity, (c) circular structure for assuring complete replication without genomic tags, (d) structural periodicity for modular assembly into enlarged genomes, (e) lack of protein-coding ability consistent with a ribosome-free habitat, and (f) replication mediated in some by ribozymes, the fingerprint of the RNA world. With the advent of DNA and proteins, those protoviroids lost some abilities and became the plant parasites we now know.

Keywords:  catalytic RNAs; hammerhead ribozymes; hepatitis δ virus; small noncoding RNAs; viroid-like satellite RNAs

Mesh:

Substances:

Year:  2014        PMID: 25002087     DOI: 10.1146/annurev-micro-091313-103416

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  53 in total

1.  Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein.

Authors:  Sukrit Silas; Georg Mohr; David J Sidote; Laura M Markham; Antonio Sanchez-Amat; Devaki Bhaya; Alan M Lambowitz; Andrew Z Fire
Journal:  Science       Date:  2016-02-26       Impact factor: 47.728

2.  When Competing Viruses Unify: Evolution, Conservation, and Plasticity of Genetic Identities.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  J Mol Evol       Date:  2015-05-27       Impact factor: 2.395

3.  Genetically Modified Organism-Free RNA Interference: Exogenous Application of RNA Molecules in Plants.

Authors:  Athanasios Dalakouras; Michael Wassenegger; Elena Dadami; Ioannis Ganopoulos; Maria L Pappas; Kalliope Papadopoulou
Journal:  Plant Physiol       Date:  2019-07-08       Impact factor: 8.340

4.  Potato Spindle Tuber Viroid Modulates Its Replication through a Direct Interaction with a Splicing Regulator.

Authors:  Jian Jiang; Heather N Smith; Di Ren; Shachinthaka D Dissanayaka Mudiyanselage; Angus L Dawe; Lei Wang; Ying Wang
Journal:  J Virol       Date:  2018-09-26       Impact factor: 5.103

Review 5.  Molecular interactions of plant viral satellites.

Authors:  Uzma Badar; Srividhya Venkataraman; Mounir AbouHaidar; Kathleen Hefferon
Journal:  Virus Genes       Date:  2020-11-23       Impact factor: 2.332

6.  Symptomatic plant viroid infections in phytopathogenic fungi.

Authors:  Shuang Wei; Ruiling Bian; Ida Bagus Andika; Erbo Niu; Qian Liu; Hideki Kondo; Liu Yang; Hongsheng Zhou; Tianxing Pang; Ziqian Lian; Xili Liu; Yunfeng Wu; Liying Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-10       Impact factor: 11.205

7.  Symptomatic plant viroid infections in phytopathogenic fungi: A request for a critical reassessment.

Authors:  Pedro Serra; Alberto Carbonell; Beatriz Navarro; Selma Gago-Zachert; Shifang Li; Francesco Di Serio; Ricardo Flores
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-21       Impact factor: 11.205

8.  Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans-Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses.

Authors:  Yi Zheng; Ying Wang; Biao Ding; Zhangjun Fei
Journal:  J Virol       Date:  2017-05-12       Impact factor: 5.103

Review 9.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

10.  The transcription initiation sites of eggplant latent viroid strands map within distinct motifs in their in vivo RNA conformations.

Authors:  Amparo López-Carrasco; Selma Gago-Zachert; Giuseppe Mileti; Sofia Minoia; Ricardo Flores; Sonia Delgado
Journal:  RNA Biol       Date:  2016       Impact factor: 4.652

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