| Literature DB >> 24998776 |
Yue-Juan Xu, Sun Chen, Jian Zhang, Shao-Hai Fang, Qian-Qian Guo, Jian Wang, Qi-Hua Fu, Fen Li, Rang Xu1, Kun Sun.
Abstract
BACKGROUND: TBX1 and CRKL haploinsufficiency is thought to cause the cardiac phenotype of the 22q11.2 deletion syndrome. However, few unequivocal mutations of TBX1 and CRKL have been discovered in isolated conotrucal heart defects (CTDs) patients. The aim of the study was to screen the mutation of TBX1 and CRKL in isolated CTDs Chinese patients without 22q11.2 deletion and identify the pathomechanism of the missense mutations.Entities:
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Year: 2014 PMID: 24998776 PMCID: PMC4099205 DOI: 10.1186/1471-2350-15-78
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1The screening results of the coding sequence. (A) Schematic representation of the TBX1 gene. The conserved T-box domain is marked with yellow squares and spans exons 3-7. The two variants described in this paper are indicated by black arrows. (B) Shown at the left are the DNA sequences of the 385G → A mutation (upper panel) and the wild-type TBX1 sequence (lower panel). The fragment was sequenced from forward and reverse directions. Shown at the right is the homologues sequence alignment of a part of the T-box domain of TBX1 from various vertebrates. (C) Shown on the left are the DNA sequences of the TBX1 gene with a 928G → A change. The three electropherograms show the homozygote AA, heterozygote GA, and homozygote GG. The homologues sequence alignment is shown at the right. The conserved amino acids are shown with a grey background, and residue 129 and 310 is indicated with a black box.
Primer sequences used to amplify and sequence all the coding exons of the and gene and exon/intron boundaries
| TBX1-EXON1 | F | 5’-AGGAGCAGATGTCTCAGCCC-3’ | 594 bp |
| R | 5’-CACCGGCTGCCTATACTCAC-3’ | ||
| TBX1-EXON2 | F | 5’-ATGACGCCATAATCCTCTGG-3’ | 725 bp |
| R | 5’-TGTGTTTTCTCCCCTTTGCT-3’ | ||
| TBX1-EXON3 | F | 5’-TCACGCAGCTCTCGCATTTC-3’ | 628 bp |
| R | 5’-CCGGCGGAGGATAGGTGTTA-3’ | ||
| TBX1-EXON4 | F | 5’-CAAGCTCCCAGTTGAGTAGG-3’ | 414 bp |
| R | 5’-GCAGGTGCCTAAAGAGTTTC-3’ | ||
| TBX1-EXON5 | F | 5’-GGCAGCAGAGGGTTCAATCT-3’ | 457 bp |
| R | 5’-GCCTCGCAGGGACTCTAAAG-3’ | ||
| TBX1-EXON6 | F | 5’-TGACCCAGCCTCATCTTGGA-3’ | 404 bp |
| R | 5’-AGGTCTAAGCGGACCCACTG-3’ | ||
| TBX1-EXON7-8 | F | 5’-GGTGCGCTTCTCCTAACACTC-3’ | 722 bp |
| R | 5’-GGAGAGGGCCGAGGAGTG-3’ | ||
| TBX1-EXON9C | F | 5’-CCAAGAGCCTTCTCTCCGC-3’ | 775 bp |
| R | 5’-TGGGGAACCGGATACTTCGA-3’ | ||
| TBX1-EXON9A | F | 5’-CGTTGGGAGATGCAGTCCT-3’ | 853 bp |
| R | 5’-GCTTACTGGACAGCAGCAC-3’ | ||
| TBX1-EXON9B | F | 5’-CTGATGGTGTGTGAGGCTGA-3’ | 636 bp |
| R | 5’-CACCTCTTGCATGCACACTT-3’ | ||
| TBX1-EXON10 | F | 5’-CTGCTCTGTTTGAGGTGGTT-3’ | 632 bp |
| R | 5’-ACGCATCAGCTTTTATGGGA-3’ | ||
| CRKL-EXON1_1 | F | 5’- GACGGTGCTCCTGATTGGCT-3’ | 747 bp |
| R | 5’-CCCAGGGCAGGTGGAAGAAT-3’ | ||
| CRKL-EXON1_2 | F | 5’-GGACAGCCGCCGCCCCTACC-3’ | 434 bp |
| R | 5’-CCCACCCCCCTATACAAGCA-3’ | ||
| CRKL-EXON2 | F | 5’-CAGTGAGCTAAGATCACGCT-3’ | 677 bp |
| R | 5’-ATGTCAAAGGACCCAAAAAG-3’ | ||
| CRKL-EXON3 | F | 5’-AAGGATCACTTGAGCCCAGG-3’ | 376 bp |
| R | 5’-AGGCAGAACAACAAAGCAGC-3’ |
Figure 2Transcriptional activation of luciferase reporter constructs by the wild-type and mutant TBX1. (A) Schematic diagram of 4XT/2-minP reporter construct. Four conserved T-half sites “ATTTCACACCT” were oriented head to tail, synthesised and subcloned into the KpnI − HindIII sites in the pGL4.25 [luc2CP/minP] plasmid. (B) and (C) show that the 293 T or COS7 cells were co-transfected with the 4XT/2-minP reporter construct containing the T-box binding elements and either a pcDNA3.1 (+) control vector (Blank), the TBX1 wild-type construct, or the mutant constructs. The results were normalized for transfection efficiency to a co-transfected renilla luciferase vector and are shown as the mean ± SEM of three independent experiments performed in triplicate.
Figure 3The phylogenetic sequence alignment of the T-box domain and 20 additional amino acids from different species located at the N and C terminus of the T-box domain. The phylogenetic analysis is from vertebrate mammals to marine zooplankton. The aminoacid residues that are identical to the TBX1 sequences are shaded. The red pentagram demonstrates the amino acid substitutions of E129K and G310S in the TBX1 found in patients. The dotted line indicated the T-box domain.
Figure 4Schematic diagram of TBX1 bound to DNA. (A) The wild type TBX1 structure with E129 is shown as sticks. (B) The superimposed structures between the wild-type TBX1 (cyan) and the TBX1E129K (grey) and the carbon atoms from E129 and its mutant K129 are colored in green and yellow, respectively, and the conformations are extracted from the end of the 5-ns simulations. (C) Local interactions with E129 in the wild-type TBX1. (D) Local interactions with K129 in the mutant TBX1. The hydrogen bonds around E129/K129 are shown as dashed lines.