Literature DB >> 24997986

Whole-exome and targeted gene sequencing of gallbladder carcinoma identifies recurrent mutations in the ErbB pathway.

Maolan Li1, Zhou Zhang2, Xiaoguang Li3, Junyi Ye4, Xiangsong Wu5, Zhujun Tan5, Chang Liu6, Baiyong Shen7, Xu-An Wang5, Wenguang Wu5, Daizhan Zhou8, Di Zhang8, Ting Wang8, Bingya Liu7, Kai Qu6, Qichen Ding5, Hao Weng5, Qian Ding5, Jiasheng Mu5, Yijun Shu5, Runfa Bao5, Yang Cao5, Peizhan Chen9, Tianyu Liu5, Lin Jiang5, Yunping Hu5, Ping Dong5, Jun Gu5, Wei Lu5, Weibin Shi5, Jianhua Lu5, Wei Gong5, Zhaohui Tang5, Yong Zhang5, Xuefeng Wang5, Y Eugene Chin10, Xiaoling Weng4, Hong Zhang4, Wei Tang11, Yonglan Zheng12, Lin He13, Hui Wang14, Yun Liu15, Yingbin Liu1.   

Abstract

Individuals with gallbladder carcinoma (GBC), the most aggressive malignancy of the biliary tract, have a poor prognosis. Here we report the identification of somatic mutations for GBC in 57 tumor-normal pairs through a combination of exome sequencing and ultra-deep sequencing of cancer-related genes. The mutation pattern is defined by a dominant prevalence of C>T mutations at TCN sites. Genes with a significant frequency (false discovery rate (FDR)<0.05) of non-silent mutations include TP53 (47.1%), KRAS (7.8%) and ERBB3 (11.8%). Moreover, ErbB signaling (including EGFR, ERBB2, ERBB3, ERBB4 and their downstream genes) is the most extensively mutated pathway, affecting 36.8% (21/57) of the GBC samples. Multivariate analyses further show that cases with ErbB pathway mutations have a worse outcome (P=0.001). These findings provide insight into the somatic mutational landscape in GBC and highlight the key role of the ErbB signaling pathway in GBC pathogenesis.

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Year:  2014        PMID: 24997986     DOI: 10.1038/ng.3030

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  33 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  A step forward in the treatment of advanced biliary tract cancer.

Authors:  Brian M Wolpin; Robert J Mayer
Journal:  N Engl J Med       Date:  2010-04-08       Impact factor: 91.245

Review 3.  Genetic aberrations in gallbladder cancer.

Authors:  Sanjeev K Maurya; Mallika Tewari; Raghvendra R Mishra; Hari S Shukla
Journal:  Surg Oncol       Date:  2010-09-29       Impact factor: 3.279

4.  Amplification and overexpression of c-erbB-2, epidermal growth factor receptor, and c-met in biliary tract cancers.

Authors:  Kumiko Nakazawa; Yoh Dobashi; Shioto Suzuki; Hideki Fujii; Yasuhisa Takeda; Akishi Ooi
Journal:  J Pathol       Date:  2005-07       Impact factor: 7.996

Review 5.  Investigational therapies targeting the ErbB (EGFR, HER2, HER3, HER4) family in GI cancers.

Authors:  Monica Dandona Desai; Bikramajit Singh Saroya; Albert Craig Lockhart
Journal:  Expert Opin Investig Drugs       Date:  2013-01-15       Impact factor: 6.206

6.  Oncogenic ERBB3 mutations in human cancers.

Authors:  Bijay S Jaiswal; Noelyn M Kljavin; Eric W Stawiski; Emily Chan; Chaitali Parikh; Steffen Durinck; Subhra Chaudhuri; Kanan Pujara; Joseph Guillory; Kyle A Edgar; Vasantharajan Janakiraman; Rolf-Peter Scholz; Krista K Bowman; Maria Lorenzo; Hong Li; Jiansheng Wu; Wenlin Yuan; Brock A Peters; Zhengyan Kan; Jeremy Stinson; Michelle Mak; Zora Modrusan; Charles Eigenbrot; Ron Firestein; Howard M Stern; Krishnaraj Rajalingam; Gabriele Schaefer; Mark A Merchant; Mark X Sliwkowski; Frederic J de Sauvage; Somasekar Seshagiri
Journal:  Cancer Cell       Date:  2013-05-13       Impact factor: 31.743

Review 7.  Novel anticancer targets: revisiting ERBB2 and discovering ERBB3.

Authors:  José Baselga; Sandra M Swain
Journal:  Nat Rev Cancer       Date:  2009-06-18       Impact factor: 60.716

8.  APOBEC3B mutagenesis in cancer.

Authors:  Kawai J Kuong; Lawrence A Loeb
Journal:  Nat Genet       Date:  2013-09       Impact factor: 38.330

9.  Predicting the functional effect of amino acid substitutions and indels.

Authors:  Yongwook Choi; Gregory E Sims; Sean Murphy; Jason R Miller; Agnes P Chan
Journal:  PLoS One       Date:  2012-10-08       Impact factor: 3.240

10.  Targeting EGFR/HER2 pathways enhances the antiproliferative effect of gemcitabine in biliary tract and gallbladder carcinomas.

Authors:  Ymera Pignochino; Ivana Sarotto; Caterina Peraldo-Neia; Junia Y Penachioni; Giuliana Cavalloni; Giorgia Migliardi; Laura Casorzo; Giovanna Chiorino; Mauro Risio; Alberto Bardelli; Massimo Aglietta; Francesco Leone
Journal:  BMC Cancer       Date:  2010-11-18       Impact factor: 4.430

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  161 in total

1.  Genomic spectra of biliary tract cancer.

Authors:  Hiromi Nakamura; Yasuhito Arai; Yasushi Totoki; Tomoki Shirota; Asmaa Elzawahry; Mamoru Kato; Natsuko Hama; Fumie Hosoda; Tomoko Urushidate; Shoko Ohashi; Nobuyoshi Hiraoka; Hidenori Ojima; Kazuaki Shimada; Takuji Okusaka; Tomoo Kosuge; Shinichi Miyagawa; Tatsuhiro Shibata
Journal:  Nat Genet       Date:  2015-08-10       Impact factor: 38.330

2.  A phase 2 trial of regorafenib as a single agent in patients with chemotherapy-refractory, advanced, and metastatic biliary tract adenocarcinoma.

Authors:  Weijing Sun; Anuj Patel; Daniel Normolle; Krishna Patel; James Ohr; James J Lee; Nathan Bahary; Edward Chu; Natalie Streeter; Summer Drummond
Journal:  Cancer       Date:  2018-12-18       Impact factor: 6.860

Review 3.  Current biologics for treatment of biliary tract cancers.

Authors:  Diana Y Zhao; Kian-Huat Lim
Journal:  J Gastrointest Oncol       Date:  2017-06

4.  Meta-signature of mutated genes in gallbladder cancer: evidence based high throughput screening assays.

Authors:  Kai Qu; Xing Zhang; Ruixia Cui; Chang Liu
Journal:  Ann Transl Med       Date:  2016-06

Review 5.  Molecular landscape and sub-classification of gastrointestinal cancers: a review of literature.

Authors:  Bita Fakhri; Kian-Huat Lim
Journal:  J Gastrointest Oncol       Date:  2017-06

Review 6.  Banxia Xiexin Decoction () Combined with Afatinib in Treatment of Advanced Gallbladder Cancer: Case Report and Literature Review.

Authors:  Li Su; Miao-Miao Wang; Meng-Ran Xu; Xiao Wang; Hong-Zhen Xia; Mei Zhang; Lei Zheng; Yao-Dong Zhu; Ming-Qi Wang; Ping Li
Journal:  Chin J Integr Med       Date:  2019-02-01       Impact factor: 1.978

7.  Next-generation sequencing survey of biliary tract cancer reveals the association between tumor somatic variants and chemotherapy resistance.

Authors:  James L Chen; Tanios Bekaii-Saab; Daniel H Ahn; Milind Javle; Chul W Ahn; Apurva Jain; Sameh Mikhail; Anne M Noonan; Kristen Ciombor; Christina Wu; Rachna T Shroff
Journal:  Cancer       Date:  2016-08-06       Impact factor: 6.860

Review 8.  The inflammatory inception of gallbladder cancer.

Authors:  Jaime A Espinoza; Carolina Bizama; Patricia García; Catterina Ferreccio; Milind Javle; Juan F Miquel; Jill Koshiol; Juan C Roa
Journal:  Biochim Biophys Acta       Date:  2016-03-12

Review 9.  The potential role of comprehensive genomic profiling to guide targeted therapy for patients with biliary cancer.

Authors:  Hwajeong Lee; Jeffrey S Ross
Journal:  Therap Adv Gastroenterol       Date:  2017-03-28       Impact factor: 4.409

10.  DNA Sequencing of Small Bowel Adenocarcinomas Identifies Targetable Recurrent Mutations in the ERBB2 Signaling Pathway.

Authors:  Liana Adam; F Anthony San Lucas; Richard Fowler; Yao Yu; Wenhui Wu; Yulun Liu; Huamin Wang; David Menter; Michael T Tetzlaff; Joe Ensor; Ganiraju Manyam; Stefan T Arold; Chad Huff; Scott Kopetz; Paul Scheet; Michael J Overman
Journal:  Clin Cancer Res       Date:  2018-10-23       Impact factor: 12.531

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