Literature DB >> 24994863

Systems biology as an approach for deciphering microbial interactions.

Puneet Kumar Singh, Pratyoosh Shukla.   

Abstract

Different systems biology approaches may have a significant consequence in deciphering microbial interactions. Here, we endeavor to summarize, epigrammatic description of sophisticated techniques and software that provides an enhanced understanding of metagenomics data analysis. Apparently, such techniques are helpful to catalog various analysis categories and components that add appraisal to understand this approach. In addition, the constructions of metabolic networks of various genes present in human gut microbiome also give significant directions for determining the topological features of target enzymes.
© The Author 2014. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  microbial interactions; systems biology

Mesh:

Year:  2014        PMID: 24994863     DOI: 10.1093/bfgp/elu023

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  11 in total

Review 1.  Combinatorial Interactions of Biotic and Abiotic Stresses in Plants and Their Molecular Mechanisms: Systems Biology Approach.

Authors:  Arun Kumar Dangi; Babita Sharma; Ishu Khangwal; Pratyoosh Shukla
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

Review 2.  Proteomic approaches in microalgae: perspectives and applications.

Authors:  Vishal Anand; Puneet Kumar Singh; Chiranjib Banerjee; Pratyoosh Shukla
Journal:  3 Biotech       Date:  2017-06-30       Impact factor: 2.406

3.  Functional analysis of the binding model of microbial inulinases using docking and molecular dynamics simulation.

Authors:  Puneet Kumar Singh; Josmi Joseph; Sukriti Goyal; Abhinav Grover; Pratyoosh Shukla
Journal:  J Mol Model       Date:  2016-03-08       Impact factor: 1.810

4.  An Alkaline Protease from Bacillus pumilus MP 27: Functional Analysis of Its Binding Model toward Its Applications As Detergent Additive.

Authors:  Mehak Baweja; Rameshwar Tiwari; Puneet K Singh; Lata Nain; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-08-03       Impact factor: 5.640

Review 5.  Recent Developments in Systems Biology and Metabolic Engineering of Plant-Microbe Interactions.

Authors:  Vishal Kumar; Mehak Baweja; Puneet K Singh; Pratyoosh Shukla
Journal:  Front Plant Sci       Date:  2016-09-26       Impact factor: 5.753

6.  Molecular Detection and Environment-Specific Diversity of Glycosyl Hydrolase Family 1 β-Glucosidase in Different Habitats.

Authors:  Rameshwar Tiwari; Kanika Kumar; Surender Singh; Lata Nain; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-10-13       Impact factor: 5.640

7.  Catalytic Interactions and Molecular Docking of Bile Salt Hydrolase (BSH) from L. plantarum RYPR1 and Its Prebiotic Utilization.

Authors:  Ruby Yadav; Puneet K Singh; Anil K Puniya; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2017-01-05       Impact factor: 5.640

8.  Probiotic Properties of Lactobacillus plantarum RYPR1 from an Indigenous Fermented Beverage Raabadi.

Authors:  Ruby Yadav; Anil K Puniya; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-10-21       Impact factor: 5.640

9.  Immunoinformatic and systems biology approaches to predict and validate peptide vaccines against Epstein-Barr virus (EBV).

Authors:  Arif Ali; Abbas Khan; Aman Chandra Kaushik; Yanjie Wang; Syed Shujait Ali; Muhammad Junaid; Shoaib Saleem; William C S Cho; Xueying Mao; Dong-Qing Wei
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

Review 10.  Current Technological Improvements in Enzymes toward Their Biotechnological Applications.

Authors:  Mehak Baweja; Lata Nain; Yutaka Kawarabayasi; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-06-16       Impact factor: 5.640

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