Literature DB >> 24989050

Complete mitochondrial genome of the brown alga Sargassum fusiforme (Sargassaceae, Phaeophyceae): genome architecture and taxonomic consideration.

Feng Liu1, Shaojun Pang1, Minbo Luo2.   

Abstract

Sargassum fusiforme (Harvey) Setchell (=Hizikia fusiformis (Harvey) Okamura) is one of the most important economic seaweeds for mariculture in China. In this study, we present the complete mitochondrial genome of S. fusiforme. The genome is 34,696 bp in length with circular organization, encoding the standard set of three ribosomal RNA genes (rRNA), 25 transfer RNA genes (tRNA), 35 protein-coding genes, and two conserved open reading frames (ORFs). Its total AT content is 62.47%, lower than other brown algae except Pylaiella littoralis. The mitogenome carries 1571 bp of intergenic region constituting 4.53% of the genome, and 13 pairs of overlapping genes with the overlap size from 1 to 90 bp. The phylogenetic analyses based on 35 protein-coding genes reveal that S. fusiforme has a closer evolutionary relationship with Sargassum muticum than Sargassum horneri, indicating Hizikia are not distinct evolutionary entity and should be reduced to synonymy with Sargassum.

Entities:  

Keywords:  Hizikia fusiformis; Phaeophyceae; Sargassaceae; Sargassum fusiforme; mitochondrial genome

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Year:  2015        PMID: 24989050     DOI: 10.3109/19401736.2014.936417

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  6 in total

1.  Mitochondrial genome of Turbinaria ornata (Sargassaceae, Phaeophyceae): comparative mitogenomics of brown algae.

Authors:  Feng Liu; Shaojun Pang
Journal:  Curr Genet       Date:  2015-04-17       Impact factor: 3.886

2.  Understanding the Evolution of Mitochondrial Genomes in Phaeophyceae Inferred from Mitogenomes of Ishige okamurae (Ishigeales) and Dictyopteris divaricata (Dictyotales).

Authors:  Feng Liu; Yongyu Zhang; Yuping Bi; Weizhou Chen; Fiona Wanjiku Moejes
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

3.  Plastid and mitochondrial genomes of Coccophora langsdorfii (Fucales, Phaeophyceae) and the utility of molecular markers.

Authors:  Louis Graf; Yae Jin Kim; Ga Youn Cho; Kathy Ann Miller; Hwan Su Yoon
Journal:  PLoS One       Date:  2017-11-02       Impact factor: 3.240

4.  Comparative mitochondrial and chloroplast genomics of a genetically distinct form of Sargassum contributing to recent "Golden Tides" in the Western Atlantic.

Authors:  Linda A Amaral-Zettler; Nicholas B Dragone; Jeffrey Schell; Beth Slikas; Leslie G Murphy; Clare E Morrall; Erik R Zettler
Journal:  Ecol Evol       Date:  2016-12-20       Impact factor: 2.912

5.  Characterization of the complete chloroplast genome of Sargassum fusiforme and its phylogenomic position within phaeophyceae.

Authors:  Yonghua Zhang; Shengqin Wang; Weiguo Qian; Yijian Shi; Nan Li; Xiufeng Yan; Huixi Zou; Mingjiang Wu
Journal:  Mitochondrial DNA B Resour       Date:  2019-09-26       Impact factor: 0.658

6.  First Draft Genome Assembly of the Seaweed Sargassum fusiforme.

Authors:  Shengqin Wang; Lidong Lin; Yijian Shi; Weiguo Qian; Nan Li; Xiufeng Yan; Huixi Zou; Mingjiang Wu
Journal:  Front Genet       Date:  2020-10-23       Impact factor: 4.599

  6 in total

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