Literature DB >> 24985885

Parsing ecological signal from noise in next generation amplicon sequencing.

Nhu H Nguyen1, Dylan Smith2, Kabir Peay2, Peter Kennedy1.   

Abstract

Keywords:  control; ecology; fungi; mock community; next generation sequencing (NGS)

Mesh：

Year:  2014        PMID： 24985885     DOI： 10.1111/nph.12923

Source DB:  PubMed          Journal:  New Phytol        ISSN： 0028-646X            Impact factor:   10.151


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  67 in total

1.  Bacterial Diversity in the Soda Saline Crater Lake from Isabel Island, Mexico.

Authors:  José Félix Aguirre-Garrido; Hugo César Ramírez-Saad; Nicolás Toro; Francisco Martínez-Abarca
Journal:  Microb Ecol       Date:  2015-09-21       Impact factor: 4.552

2.  Ectomycorrhizal fungal spore bank recovery after a severe forest fire: some like it hot.

Authors:  Sydney I Glassman; Carrie R Levine; Angela M DiRocco; John J Battles; Thomas D Bruns
Journal:  ISME J       Date:  2015-10-16       Impact factor: 10.302

3.  Amplicon-Based Pyrosequencing Reveals High Diversity of Protistan Parasites in Ships' Ballast Water: Implications for Biogeography and Infectious Diseases.

Authors:  K M Pagenkopp Lohan; R C Fleischer; K J Carney; K K Holzer; G M Ruiz
Journal:  Microb Ecol       Date:  2015-10-17       Impact factor: 4.552

4.  Penicillin Trunk Injection Affects Bacterial Community Structure in Citrus Trees.

Authors:  Marina S Ascunce; Keumchul Shin; Jose C Huguet-Tapia; Ravin Poudel; Karen A Garrett; Ariena H C van Bruggen; Erica M Goss
Journal:  Microb Ecol       Date:  2018-12-01       Impact factor: 4.552

5.  What lies beneath? Fungal diversity at the bottom of Lake Michigan and Lake Superior.

Authors:  Hannah E Wahl; Daniel B Raudabaugh; Elizabeth M Bach; Tiffany S Bone; Mark R Luttenton; Robert H Cichewicz; Andrew N Miller
Journal:  J Great Lakes Res       Date:  2018-01-10       Impact factor: 2.480

6.  The Microbiome of Pinus muricata Ectomycorrhizae: Community Assemblages, Fungal Species Effects, and Burkholderia as Important Bacteria in Multipartnered Symbioses.

Authors:  Nhu H Nguyen; Thomas D Bruns
Journal:  Microb Ecol       Date:  2015-02-17       Impact factor: 4.552

7.  The Inhalable Mycobiome of Sawmill Workers: Exposure Characterization and Diversity.

Authors:  Anne Straumfors; Oda A H Foss; Janina Fuss; Steen K Mollerup; Håvard Kauserud; Sunil Mundra
Journal:  Appl Environ Microbiol       Date:  2019-10-16       Impact factor: 4.792

8.  Plant-microbe specificity varies as a function of elevation.

Authors:  Gerald M Cobian; Cameron P Egan; Anthony S Amend
Journal:  ISME J       Date:  2019-07-12       Impact factor: 10.302

Review 9.  Early detection monitoring for aquatic non-indigenous species: Optimizing surveillance, incorporating advanced technologies, and identifying research needs.

Authors:  Anett S Trebitz; Joel C Hoffman; John A Darling; Erik M Pilgrim; John R Kelly; Emily A Brown; W Lindsay Chadderton; Scott P Egan; Erin K Grey; Syed A Hashsham; Katy E Klymus; Andrew R Mahon; Jeffrey L Ram; Martin T Schultz; Carol A Stepien; James C Schardt
Journal:  J Environ Manage       Date:  2017-07-22       Impact factor: 6.789

10.  Location, Root Proximity, and Glyphosate-Use History Modulate the Effects of Glyphosate on Fungal Community Networks of Wheat.

Authors:  Daniel C Schlatter; Chuntao Yin; Ian Burke; Scot Hulbert; Timothy Paulitz
Journal:  Microb Ecol       Date:  2017-12-07       Impact factor: 4.552
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