Literature DB >> 2498330

Hydride transfer by dihydrofolate reductase. Causes and consequences of the wide range of rates exhibited by bacterial and vertebrate enzymes.

W A Beard1, J R Appleman, T J Delcamp, J H Freisheim, R L Blakley.   

Abstract

Transient and steady-state kinetics have been examined for dihydrofolate reductase (DHFR) from a number of sources. Rates of hydride transfer at pH 7.65 cover a wide range, from 7 s-1 for DHFR from a strain of Lactobacillus casei (LCDHFR1) to 3000 s-1 for recombinant human DHFR (rHDHFR). In all cases as the pH is increased from 7 to 10, Vmax for the steady-state reaction decreases, and DVmax, the primary isotope effect, increases. This indicates a decrease in the rate of hydride transfer with increasing pH. The cross-over points, at which rates of product release and hydride transfer become equal, were calculated to occur at DVmax = 2.34. The higher the rate of hydride transfer at pH 7.65, the higher the pH of the cross-over point. For LCDHFR1 the low rate of hydride transfer results in this process being partially rate-limiting for the steady-state reaction even at pH 5, with a cross-over point at about pH 7. At pH 7.65 the burst phase associated with the initial conversion of enzyme-bound substrates to enzyme-bound products has an isotope effect of 3 or higher for LCDHFR and for DHFR from Escherichia coli (ECDHFR). In contrast, the vertebrate DHFRs (bovine, BDHFR; chicken, CDHFR; and rHDHFR) exhibit a burst of product formation which is only partially limited by hydride transfer at this pH (Dkb: 2.3, 2.2, and 2.1, respectively). An obligatory isomerization of the ternary substrate complex or of the ternary product complex is postulated to be partially rate-limiting for the vertebrate enzymes. At pH 5 LCDHFR1 and ECDHFR also exhibit evidence of such a rate-limiting obligatory conformational transition of the substrate or product ternary complex.

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Year:  1989        PMID: 2498330

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  12 in total

1.  Conformational change of the methionine 20 loop of Escherichia coli dihydrofolate reductase modulates pKa of the bound dihydrofolate.

Authors:  Ilja V Khavrutskii; Daniel J Price; Jinhyuk Lee; Charles L Brooks
Journal:  Protein Sci       Date:  2007-05-01       Impact factor: 6.725

2.  Kinetic and chemical mechanism of the dihydrofolate reductase from Mycobacterium tuberculosis.

Authors:  Clarissa M Czekster; An Vandemeulebroucke; John S Blanchard
Journal:  Biochemistry       Date:  2010-12-29       Impact factor: 3.162

Review 3.  Multiple intermediates, diverse conformations, and cooperative conformational changes underlie the catalytic hydride transfer reaction of dihydrofolate reductase.

Authors:  Karunesh Arora; Charles L Brooks
Journal:  Top Curr Chem       Date:  2013

4.  Functional significance of evolving protein sequence in dihydrofolate reductase from bacteria to humans.

Authors:  C Tony Liu; Philip Hanoian; Jarrod B French; Thomas H Pringle; Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-03       Impact factor: 11.205

5.  The Effect of Protein Mass Modulation on Human Dihydrofolate Reductase.

Authors:  Kevin Francis; Paul J Sapienza; Andrew L Lee; Amnon Kohen
Journal:  Biochemistry       Date:  2016-02-09       Impact factor: 3.162

6.  Amino acid substitution in the active site of DNA polymerase β explains the energy barrier of the nucleotidyl transfer reaction.

Authors:  Vinod K Batra; Lalith Perera; Ping Lin; David D Shock; William A Beard; Lars C Pedersen; Lee G Pedersen; Samuel H Wilson
Journal:  J Am Chem Soc       Date:  2013-05-16       Impact factor: 15.419

7.  Cloning and heterologous expression of Plasmodium ovale dihydrofolate reductase-thymidylate synthase gene.

Authors:  Srisuda Tirakarn; Pinpunya Riangrungroj; Palangpon Kongsaeree; Mallika Imwong; Yongyuth Yuthavong; Ubolsree Leartsakulpanich
Journal:  Parasitol Int       Date:  2012-01-02       Impact factor: 2.230

8.  Divergent evolution of protein conformational dynamics in dihydrofolate reductase.

Authors:  Gira Bhabha; Damian C Ekiert; Madeleine Jennewein; Christian M Zmasek; Lisa M Tuttle; Gerard Kroon; H Jane Dyson; Adam Godzik; Ian A Wilson; Peter E Wright
Journal:  Nat Struct Mol Biol       Date:  2013-09-29       Impact factor: 15.369

9.  The crystal structure of a tetrahydrofolate-bound dihydrofolate reductase reveals the origin of slow product release.

Authors:  Hongnan Cao; Mu Gao; Hongyi Zhou; Jeffrey Skolnick
Journal:  Commun Biol       Date:  2018-12-12

10.  Effects of Non-Natural Amino Acid Incorporation into the Enzyme Core Region on Enzyme Structure and Function.

Authors:  H Edward Wong; Inchan Kwon
Journal:  Int J Mol Sci       Date:  2015-09-21       Impact factor: 5.923

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