Literature DB >> 24980851

A method suitable for DNA extraction from humus-rich soil.

Tianjin Miao1, Song Gao, Shengwei Jiang, Guoshi Kan, Pengju Liu, Xianming Wu, Yingfeng An, Shuo Yao.   

Abstract

A rapid and convenient method for extracting DNA from soil is presented. Soil DNA is extracted by direct cell lysis in the presence of EDTA, SDS, phenol, chloroform and isoamyl alcohol (3-methyl-1-butanol) followed by precipitation with 2-propanol. The extracted DNA is purified by modified DNA purification kit and DNA gel extraction kit. With this method, DNA extracted from humus-rich dark brown forest soil was free from humic substances and, therefore, could be used for efficient PCR amplification and restriction digestion. In contrast, DNA sample extracted with the traditional CTAB-based method had lower yield and purity, and no DNA could be extracted from the same soil sample with a commonly-used commercial soil DNA isolation kit. In addition, this method is time-saving and convenient, providing an efficient choice especially for DNA extraction from humus-rich soils.

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Year:  2014        PMID: 24980851     DOI: 10.1007/s10529-014-1591-5

Source DB:  PubMed          Journal:  Biotechnol Lett        ISSN: 0141-5492            Impact factor:   2.461


  2 in total

1.  Illumina sequencing and assessment of new cost-efficient protocol for metagenomic-DNA extraction from environmental water samples.

Authors:  Mariam Hassan; Tamer Essam; Salwa Megahed
Journal:  Braz J Microbiol       Date:  2018-04-03       Impact factor: 2.476

2.  A low-cost pipeline for soil microbiome profiling.

Authors:  Anita Bollmann-Giolai; Michael Giolai; Darren Heavens; Iain Macaulay; Jacob Malone; Matthew D Clark
Journal:  Microbiologyopen       Date:  2020-11-22       Impact factor: 3.139

  2 in total

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