Literature DB >> 24974036

Analysis of focal adhesion turnover: a quantitative live-cell imaging example.

Samantha J Stehbens1, Torsten Wittmann2.   

Abstract

Recent advances in optical and fluorescent protein technology have rapidly raised expectations in cell biology, allowing quantitative insights into dynamic intracellular processes like never before. However, quantitative live-cell imaging comes with many challenges including how best to translate dynamic microscopy data into numerical outputs that can be used to make meaningful comparisons rather than relying on representative data sets. Here, we use analysis of focal adhesion turnover dynamics as a straightforward specific example on how to image, measure, and analyze intracellular protein dynamics, but we believe this outlines a thought process and can provide guidance on how to understand dynamic microcopy data of other intracellular structures.
© 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cell migration; Curve fitting; Fluorescence microscopy; Fluorescent proteins; Focal adhesion dynamics; Image analysis; Quantitative microscopy; Spinning disk confocal microscopy

Mesh:

Year:  2014        PMID: 24974036      PMCID: PMC4198331          DOI: 10.1016/B978-0-12-420138-5.00018-5

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  14 in total

1.  Reducing background fluorescence reveals adhesions in 3D matrices.

Authors:  Kristopher E Kubow; Alan Rick Horwitz
Journal:  Nat Cell Biol       Date:  2011-01       Impact factor: 28.824

Review 2.  Cell adhesion: integrating cytoskeletal dynamics and cellular tension.

Authors:  J Thomas Parsons; Alan Rick Horwitz; Martin A Schwartz
Journal:  Nat Rev Mol Cell Biol       Date:  2010-09       Impact factor: 94.444

3.  Mechanical forces alter zyxin unbinding kinetics within focal adhesions of living cells.

Authors:  Tanmay P Lele; Jay Pendse; Sanjay Kumar; Matthew Salanga; John Karavitis; Donald E Ingber
Journal:  J Cell Physiol       Date:  2006-04       Impact factor: 6.384

4.  Differential transmission of actin motion within focal adhesions.

Authors:  Ke Hu; Lin Ji; Kathryn T Applegate; Gaudenz Danuser; Clare M Waterman-Storer
Journal:  Science       Date:  2007-01-05       Impact factor: 47.728

5.  Nanoscale architecture of integrin-based cell adhesions.

Authors:  Pakorn Kanchanawong; Gleb Shtengel; Ana M Pasapera; Ericka B Ramko; Michael W Davidson; Harald F Hess; Clare M Waterman
Journal:  Nature       Date:  2010-11-25       Impact factor: 49.962

6.  Myosin II activity regulates vinculin recruitment to focal adhesions through FAK-mediated paxillin phosphorylation.

Authors:  Ana M Pasapera; Ian C Schneider; Erin Rericha; David D Schlaepfer; Clare M Waterman
Journal:  J Cell Biol       Date:  2010-03-22       Impact factor: 10.539

7.  FAK-Src signalling through paxillin, ERK and MLCK regulates adhesion disassembly.

Authors:  Donna J Webb; Karen Donais; Leanna A Whitmore; Sheila M Thomas; Christopher E Turner; J Thomas Parsons; Alan F Horwitz
Journal:  Nat Cell Biol       Date:  2004-01-25       Impact factor: 28.824

8.  BoxPlotR: a web tool for generation of box plots.

Authors:  Michaela Spitzer; Jan Wildenhain; Juri Rappsilber; Mike Tyers
Journal:  Nat Methods       Date:  2014-02       Impact factor: 28.547

9.  Cell to substratum contacts of chick fibroblasts and their relation to the microfilament system. A correlated interference-reflexion and high-voltage electron-microscope study.

Authors:  J P Heath; G A Dunn
Journal:  J Cell Sci       Date:  1978-02       Impact factor: 5.285

10.  High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells.

Authors:  Mathew E Berginski; Eric A Vitriol; Klaus M Hahn; Shawn M Gomez
Journal:  PLoS One       Date:  2011-07-14       Impact factor: 3.240

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  17 in total

1.  Purinoreceptor P2X7 Regulation of Ca(2+) Mobilization and Cytoskeletal Rearrangement Is Required for Corneal Reepithelialization after Injury.

Authors:  Martin S Minns; Gregory Teicher; Celeste B Rich; Vickery Trinkaus-Randall
Journal:  Am J Pathol       Date:  2015-12-10       Impact factor: 4.307

2.  Loss of β-PIX inhibits focal adhesion disassembly and promotes keratinocyte motility via myosin light chain activation.

Authors:  Sho Hiroyasu; Gregory P Stimac; Susan B Hopkinson; Jonathan C R Jones
Journal:  J Cell Sci       Date:  2017-06-08       Impact factor: 5.285

3.  A mathematical analysis of focal adhesion lifetimes and their effect on cell motility.

Authors:  Mary Ellen Rosen; J C Dallon
Journal:  Biophys J       Date:  2022-02-07       Impact factor: 4.033

4.  PTPN3 suppresses lung cancer cell invasiveness by counteracting Src-mediated DAAM1 activation and actin polymerization.

Authors:  Meng-Yen Li; Wen-Hsin Peng; Chien-Hsun Wu; Ya-Min Chang; Yu-Ling Lin; Geen-Dong Chang; Han-Chung Wu; Guang-Chao Chen
Journal:  Oncogene       Date:  2019-08-12       Impact factor: 9.867

5.  Spatial regulation of MCAK promotes cell polarization and focal adhesion turnover to drive robust cell migration.

Authors:  Hailing Zong; Mark Hazelbaker; Christina Moe; Stephanie C Ems-McClung; Ke Hu; Claire E Walczak
Journal:  Mol Biol Cell       Date:  2021-02-10       Impact factor: 4.138

6.  CLASPs link focal-adhesion-associated microtubule capture to localized exocytosis and adhesion site turnover.

Authors:  Samantha J Stehbens; Matthew Paszek; Hayley Pemble; Andreas Ettinger; Sarah Gierke; Torsten Wittmann
Journal:  Nat Cell Biol       Date:  2014-05-25       Impact factor: 28.824

7.  NBR1 enables autophagy-dependent focal adhesion turnover.

Authors:  Candia M Kenific; Samantha J Stehbens; Juliet Goldsmith; Andrew M Leidal; Nathalie Faure; Jordan Ye; Torsten Wittmann; Jayanta Debnath
Journal:  J Cell Biol       Date:  2016-02-22       Impact factor: 10.539

8.  Regulation of focal adhesion turnover in SDF-1α-stimulated migration of mesenchymal stem cells in neural differentiation.

Authors:  Ya'nan Hu; Junhou Lu; Xiaojing Xu; Jingya Lyu; Huanxiang Zhang
Journal:  Sci Rep       Date:  2017-08-30       Impact factor: 4.379

9.  Rasa3 controls turnover of endothelial cell adhesion and vascular lumen integrity by a Rap1-dependent mechanism.

Authors:  Patricia Molina-Ortiz; Tanguy Orban; Maud Martin; Audrey Habets; Franck Dequiedt; Stéphane Schurmans
Journal:  PLoS Genet       Date:  2018-01-30       Impact factor: 5.917

10.  Quantitative analysis of focal adhesion dynamics using photonic resonator outcoupler microscopy (PROM).

Authors:  Yue Zhuo; Ji Sun Choi; Thibault Marin; Hojeong Yu; Brendan A Harley; Brian T Cunningham
Journal:  Light Sci Appl       Date:  2018-05-30       Impact factor: 17.782

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