Literature DB >> 24971911

Transformation of a wobble 2-thiouridine to 2-selenouridine via S-geranyl-2-thiouridine as a possible cellular pathway.

Paulina Bartos1, Anna Maciaszek2, Anna Rosinska3, Elzbieta Sochacka4, Barbara Nawrot5.   

Abstract

The newly discovered S-geranylated 2-thiouridines (geS2U) (Dumelin et al., 2012) and 2-selenouridines (Se2U) were recently shown to be synthesized by a single enzyme (selenouridine synthase, SelU) through two distinct pathways using the same 2-thiouridine substrate (S2U); however, no clear catalytic mechanism was proposed. We suggest that S-geranyl-2-thiouridine is an intermediate of the SelU-catalyzed conversion of S2U to Se2U. The successful chemical transformation of S2UgeS2USe2U is demonstrated here as an initial approximation of the intracellular pathway. The structure of Se2U was confirmed by spectroscopic methods, which included, for the first time, (77)Se NMR data (δ 354ppm).
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  2-Selenouridine; 2-Thiouridine; 77Se NMR; S-alkylation; S-geranyl-2-thiouridine; SelU; Selenium chemical shift; Selenouridine synthase

Mesh:

Substances:

Year:  2014        PMID: 24971911     DOI: 10.1016/j.bioorg.2014.05.012

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  9 in total

1.  C5-substituents of uridines and 2-thiouridines present at the wobble position of tRNA determine the formation of their keto-enol or zwitterionic forms - a factor important for accuracy of reading of guanosine at the 3΄-end of the mRNA codons.

Authors:  Elzbieta Sochacka; Elzbieta Lodyga-Chruscinska; Justyna Pawlak; Marek Cypryk; Paulina Bartos; Katarzyna Ebenryter-Olbinska; Grazyna Leszczynska; Barbara Nawrot
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

2.  Oxidative opening of the aromatic ring: Tracing the natural history of a large superfamily of dioxygenase domains and their relatives.

Authors:  A Maxwell Burroughs; Margaret E Glasner; Kevin P Barry; Erika A Taylor; L Aravind
Journal:  J Biol Chem       Date:  2019-05-15       Impact factor: 5.157

3.  Escherichia coli tRNA 2-Selenouridine Synthase (SelU): Elucidation of Substrate Specificity to Understand the Role of S-Geranyl-tRNA in the Conversion of 2-Thio- into 2-Selenouridines in Bacterial tRNA.

Authors:  Patrycja Szczupak; Malgorzata Sierant; Ewelina Wielgus; Ewa Radzikowska-Cieciura; Katarzyna Kulik; Agnieszka Krakowiak; Paulina Kuwerska; Grazyna Leszczynska; Barbara Nawrot
Journal:  Cells       Date:  2022-05-02       Impact factor: 7.666

4.  Transfer RNA Bound to MnmH Protein Is Enriched with Geranylated tRNA--A Possible Intermediate in Its Selenation?

Authors:  Gunilla Jäger; Peng Chen; Glenn R Björk
Journal:  PLoS One       Date:  2016-04-13       Impact factor: 3.240

5.  Synthesis, base pairing and structure studies of geranylated RNA.

Authors:  Rui Wang; Sweta Vangaveti; Srivathsan V Ranganathan; Maria Basanta-Sanchez; Phensinee Haruehanroengra; Alan Chen; Jia Sheng
Journal:  Nucleic Acids Res       Date:  2016-06-15       Impact factor: 16.971

Review 6.  Diverse Mechanisms of Sulfur Decoration in Bacterial tRNA and Their Cellular Functions.

Authors:  Chenkang Zheng; Katherine A Black; Patricia C Dos Santos
Journal:  Biomolecules       Date:  2017-03-22

7.  C5-Substituted 2-Selenouridines Ensure Efficient Base Pairing with Guanosine; Consequences for Reading the NNG-3' Synonymous mRNA Codons.

Authors:  Grazyna Leszczynska; Marek Cypryk; Bartlomiej Gostynski; Klaudia Sadowska; Paulina Herman; Grzegorz Bujacz; Elzbieta Lodyga-Chruscinska; Elzbieta Sochacka; Barbara Nawrot
Journal:  Int J Mol Sci       Date:  2020-04-20       Impact factor: 5.923

8.  S-Geranyl-2-thiouridine wobble nucleosides of bacterial tRNAs; chemical and enzymatic synthesis of S-geranylated-RNAs and their physicochemical characterization.

Authors:  Malgorzata Sierant; Grazyna Leszczynska; Klaudia Sadowska; Agnieszka Dziergowska; Michal Rozanski; Elzbieta Sochacka; Barbara Nawrot
Journal:  Nucleic Acids Res       Date:  2016-08-26       Impact factor: 16.971

9.  Optimized Biocatalytic Synthesis of 2-Selenopyrimidine Nucleosides by Transglycosylation*.

Authors:  Katja F Hellendahl; Felix Kaspar; Xinrui Zhou; Zhaoyi Yang; Zhen Huang; Peter Neubauer; Anke Kurreck
Journal:  Chembiochem       Date:  2021-03-31       Impact factor: 3.164

  9 in total

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