Literature DB >> 24965370

Weighted morphology: a new approach towards phylogenetic assessment of Nostocales (Cyanobacteria).

Swati Mishra1, Poonam Bhargava, Siba Prasad Adhikary, Anubhav Pradeep, Lal Chand Rai.   

Abstract

The classification of order Nostocales (Cyanobacteria) and inter relationships of morphologically similar taxa is still debatable due to ever changing morphological features. No attempt has been made to improve the morphological taxonomy despite the fact that it is the morphology that represents the totality of genes. To test the validity of morphological taxonomy and fine tune the phylogenetic relationships within the order Nostocales a new weighted morphology approach was applied by using 76 isolates and their 16S rRNA gene sequences. Further, the study was extended with morphological data set of the remaining 232 taxa for which no molecular data are yet available. Trichome aggregation, heterocyst shape, and akinete shape are suggested as important and stable features for identification. At 30% weight assignment to the selected morphological characters, morphological taxonomy found 36% compatible with 16S tree. Adding weight to the morphological characters considerably improved the congruence between the morphology and 16S rRNA-based phylogenetic trees of the order Nostocales. When the weighting procedure was extended to all the Nostocalean members irrespective of molecular data availability, it was found that Nostoc sphaericum and Nostoc microscopicum closely assembled in a single clade. Closer arrangement of Aulosira and Nodularia represent the subfamily aulosirae (Bornet and Flahault Ann Sci Nat Bot 7:223-224, 1888) while taxonomic affiliation of Cylindrospermum with Nostoc, Anabaena, and Raphidiopsis representing the subfamily anabaenae (Bornet and Flahault Ann Sci Nat Bot 7:223-224, 1888) was resolved.

Entities:  

Mesh:

Year:  2014        PMID: 24965370     DOI: 10.1007/s00709-014-0629-9

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.356


  14 in total

1.  Phylogenetic comparison of the cyanobacterial genera Anabaena and Aphanizomenon.

Authors:  Muriel Gugger; Christina Lyra; Peter Henriksen; Alain Couté; Jean-François Humbert; Kaarina Sivonen
Journal:  Int J Syst Evol Microbiol       Date:  2002-09       Impact factor: 2.747

2.  Polyphyly of true branching cyanobacteria (Stigonematales).

Authors:  Muriel F Gugger; Lucien Hoffmann
Journal:  Int J Syst Evol Microbiol       Date:  2004-03       Impact factor: 2.747

3.  A novel algorithm and web-based tool for comparing two alternative phylogenetic trees.

Authors:  Tom M W Nye; Pietro Liò; Walter R Gilks
Journal:  Bioinformatics       Date:  2005-10-18       Impact factor: 6.937

4.  Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera.

Authors:  C Lyra; S Suomalainen; M Gugger; C Vezie; P Sundman; L Paulin; K Sivonen
Journal:  Int J Syst Evol Microbiol       Date:  2001-03       Impact factor: 2.747

5.  Strains of the cyanobacterial genera Calothrix and Rivularia isolated from the Baltic Sea display cryptic diversity and are distantly related to Gloeotrichia and Tolypothrix.

Authors:  Leila M Sihvonen; Christina Lyra; David P Fewer; Pirjo Rajaniemi-Wacklin; Jaana M Lehtimäki; Matti Wahlsten; Kaarina Sivonen
Journal:  FEMS Microbiol Ecol       Date:  2007-04-27       Impact factor: 4.194

6.  Cladistic analysis of the subgenus Anopheles (Anopheles) Meigen (Diptera: Culicidae) based on morphological characters.

Authors:  Eliana Collucci; Maria Anice Mureb Sallum
Journal:  Mem Inst Oswaldo Cruz       Date:  2007-06       Impact factor: 2.743

7.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

8.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

9.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

10.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

View more
  2 in total

Review 1.  A Metagenomic Approach to Cyanobacterial Genomics.

Authors:  Danillo O Alvarenga; Marli F Fiore; Alessandro M Varani
Journal:  Front Microbiol       Date:  2017-05-09       Impact factor: 5.640

2.  A new strain of Neowestiellopsis (Hapalosiphonaceae): first observation of toxic soil cyanobacteria from agricultural fields in Iran.

Authors:  Bahareh Nowruzi; Lenka Hutárová; Itzel Becerra Absalón; Liwei Liu
Journal:  BMC Microbiol       Date:  2022-04-18       Impact factor: 4.465

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.