Literature DB >> 24965016

Mass++: A Visualization and Analysis Tool for Mass Spectrometry.

Satoshi Tanaka1, Yuichiro Fujita1, Howell E Parry1, Akiyasu C Yoshizawa1, Kentaro Morimoto1, Masaki Murase1, Yoshihiro Yamada1, Jingwen Yao1, Shin-Ichi Utsunomiya1, Shigeki Kajihara1, Mitsuru Fukuda2,3, Masayuki Ikawa2,3, Tsuyoshi Tabata2, Kentaro Takahashi2, Ken Aoshima2, Yoshito Nihei4, Takaaki Nishioka4, Yoshiya Oda2, Koichi Tanaka1.   

Abstract

We have developed Mass++, a plug-in style visualization and analysis tool for mass spectrometry. Its plug-in style enables users to customize it and to develop original functions. Mass++ has several kinds of plug-ins, including rich viewers and analysis methods for proteomics and metabolomics. Plug-ins for supporting vendors' raw data are currently available; hence, Mass++ can read several data formats. Mass++ is both a desktop tool and a software development platform. Original functions can be developed without editing the Mass++ source code. Here, we present this tool's capability to rapidly analyze MS data and develop functions by providing examples of label-free quantitation and implementing plug-ins or scripts. Mass++ is freely available at http://www.first-ms3d.jp/english/ .

Keywords:  Mass++; MassBank; identification; mass spectrometry; platform; plug-in; quantitation

Year:  2014        PMID: 24965016     DOI: 10.1021/pr500155z

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  17 in total

1.  Peptide Peak Detection for Low Resolution MALDI-TOF Mass Spectrometry.

Authors:  Jingwen Yao; Shin-Ichi Utsunomiya; Shigeki Kajihara; Tsuyoshi Tabata; Ken Aoshima; Yoshiya Oda; Koichi Tanaka
Journal:  Mass Spectrom (Tokyo)       Date:  2014-08-23

2.  Winners of CASMI2013: Automated Tools and Challenge Data.

Authors:  Takaaki Nishioka; Takeshi Kasama; Tomoya Kinumi; Hidefumi Makabe; Fumio Matsuda; Daisuke Miura; Masahiro Miyashita; Takemichi Nakamura; Ken Tanaka; Atsushi Yamamoto
Journal:  Mass Spectrom (Tokyo)       Date:  2014-09-02

3.  High performance plasma amyloid-β biomarkers for Alzheimer's disease.

Authors:  Akinori Nakamura; Naoki Kaneko; Victor L Villemagne; Takashi Kato; James Doecke; Vincent Doré; Chris Fowler; Qiao-Xin Li; Ralph Martins; Christopher Rowe; Taisuke Tomita; Katsumi Matsuzaki; Kenji Ishii; Kazunari Ishii; Yutaka Arahata; Shinichi Iwamoto; Kengo Ito; Koichi Tanaka; Colin L Masters; Katsuhiko Yanagisawa
Journal:  Nature       Date:  2018-01-31       Impact factor: 49.962

Review 4.  Algorithms and design strategies towards automated glycoproteomics analysis.

Authors:  Han Hu; Kshitij Khatri; Joseph Zaia
Journal:  Mass Spectrom Rev       Date:  2016-01-04       Impact factor: 10.946

5.  BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics.

Authors:  Dmitry M Avtonomov; Alexander Raskind; Alexey I Nesvizhskii
Journal:  J Proteome Res       Date:  2016-06-28       Impact factor: 4.466

Review 6.  Identification of small molecules using accurate mass MS/MS search.

Authors:  Tobias Kind; Hiroshi Tsugawa; Tomas Cajka; Yan Ma; Zijuan Lai; Sajjan S Mehta; Gert Wohlgemuth; Dinesh Kumar Barupal; Megan R Showalter; Masanori Arita; Oliver Fiehn
Journal:  Mass Spectrom Rev       Date:  2017-04-24       Impact factor: 10.946

7.  Combination Metabolomics Approach for Identifying Endogenous Substrates of Carnitine/Organic Cation Transporter OCTN1.

Authors:  Yusuke Masuo; Yuri Ohba; Kohei Yamada; Aya Hasan Al-Shammari; Natsumi Seba; Noritaka Nakamichi; Takuo Ogihara; Munetaka Kunishima; Yukio Kato
Journal:  Pharm Res       Date:  2018-10-02       Impact factor: 4.200

8.  Characterization of N-Succinylation of L-Lysylphosphatidylglycerol in Bacillus subtilis Using Tandem Mass Spectrometry.

Authors:  Metin Atila; George Katselis; Paulos Chumala; Yu Luo
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-09       Impact factor: 3.109

Review 9.  Open-access metabolomics databases for natural product research: present capabilities and future potential.

Authors:  Sean R Johnson; Bernd Markus Lange
Journal:  Front Bioeng Biotechnol       Date:  2015-03-04

10.  A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry.

Authors:  Ken Aoshima; Kentaro Takahashi; Masayuki Ikawa; Takayuki Kimura; Mitsuru Fukuda; Satoshi Tanaka; Howell E Parry; Yuichiro Fujita; Akiyasu C Yoshizawa; Shin-Ichi Utsunomiya; Shigeki Kajihara; Koichi Tanaka; Yoshiya Oda
Journal:  BMC Bioinformatics       Date:  2014-11-25       Impact factor: 3.169

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