Literature DB >> 24960559

The whole chloroplast genome of wild rice (Oryza australiensis).

Zhiqiang Wu1, Song Ge1.   

Abstract

The whole chloroplast genome of wild rice (Oryza australiensis) is characterized in this study. The genome size is 135,224  bp, exhibiting a typical circular structure including a pair of 25,776  bp inverted repeats (IRa,b) separated by a large single-copy region (LSC) of 82,212  bp and a small single-copy region (SSC) of 12,470  bp. The overall GC content of the genome is 38.95%. 110 unique genes were annotated, including 76 protein-coding genes, 4 ribosomal RNA genes, and 30t RNA genes. Among these, 18 are duplicated in the inverted repeat regions, 13 genes contain one intron, and 2 genes (rps12 and ycf3) have two introns.

Entities:  

Keywords:  Chloroplast genome; Fosmid library; Oryza; Oryza australiensis

Mesh：

Year:  2014        PMID： 24960559     DOI： 10.3109/19401736.2014.928868

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN： 2470-1394            Impact factor:   1.514


  6 in total

1.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

2.  Are differences in genomic data sets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes.

Authors:  Zhiqiang Wu; Luke R Tembrock; Song Ge
Journal:  PLoS One       Date:  2015-02-06       Impact factor: 3.240

3.  Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species.

Authors:  Zhiwen Chen; Kun Feng; Corrinne E Grover; Pengbo Li; Fang Liu; Yumei Wang; Qin Xu; Mingzhao Shang; Zhongli Zhou; Xiaoyan Cai; Xingxing Wang; Jonathan F Wendel; Kunbo Wang; Jinping Hua
Journal:  PLoS One       Date:  2016-06-16       Impact factor: 3.240

4.  The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae).

Authors:  Fengqi Liu; Luke R Tembrock; Cheng Sun; Guiqing Han; Changhong Guo; Zhiqiang Wu
Journal:  Mitochondrial DNA B Resour       Date:  2016-04-11       Impact factor: 0.658

5.  The complete chloroplast genome of Arabidopsis lyrata.

Authors:  Zhiqiang Wu; Cuihua Gu; Luke R Tembrock; Cheng Sun
Journal:  Mitochondrial DNA B Resour       Date:  2016-04-18       Impact factor: 0.658

6.  OsSLC1 Encodes a Pentatricopeptide Repeat Protein Essential for Early Chloroplast Development and Seedling Survival.

Authors:  Jun Lv; Lianguang Shang; Yun Chen; Yao Han; Xiaoyan Yang; Shuzhang Xie; Wenqin Bai; Mingyu Hu; Hong Wu; Kairong Lei; Ya'nan Yang; Shengzhen Ge; Hai Phuong Trinh; Yi Zhang; Longbiao Guo; Zhongwei Wang
Journal:  Rice (N Y)       Date:  2020-04-15       Impact factor: 4.783
  6 in total

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