| Literature DB >> 24950178 |
Osman I Osman1, Shaaban A Elroby2, Saadullah G Aziz3, Rifaat H Hilal4.
Abstract
MP2, DFT and CCSD methods with 6-311++G** and aug-cc-pvdz basis sets have been used to probe the structural changes and relative energies of E-prop-2-ynylideneamine (I), Z-prop-2-ynylideneamine (II), prop-1,2-diene-1-imine (III) and vinyl cyanide (IV). The energy near-equivalence and provenance of preference of isomers and tautomers were investigated by NBO calculations using HF and B3LYP methods with 6-311++G** and aug-cc-pvdz basis sets. All substrates have Cs symmetry. The optimized geometries were found to be mainly theoretical method dependent. All elected levels of theory have computed I/II total energy of isomerization (ΔE) of 1.707 to 3.707 kJ/mol in favour of II at 298.15 K. MP2 and CCSD methods have indicated clearly the preference of II over III; while the B3LYP functional predicted nearly similar total energies. All tested levels of theory yielded a global II/IV tautomerization total energy (ΔE) of 137.3-148.4 kJ/mol in support of IV at 298.15 K. The negative values of ΔS indicated that IV is favoured at low temperature. At high temperature, a reverse tautomerization becomes spontaneous and II is preferred. The existence of II in space was debated through the interpretation and analysis of the thermodynamic and kinetic studies of this tautomerization reaction and the presence of similar compounds in the Interstellar Medium (ISM).Entities:
Mesh:
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Year: 2014 PMID: 24950178 PMCID: PMC4100199 DOI: 10.3390/ijms150611064
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1The numbering of atoms for E-prop-2-ynylideneamine (I), Z-prop-2-ynylideneamine (II) and vinyl cyanide (IV), together with their optimized bond lengths (Å) and angles (degrees) using B3LYP/aug-cc-pvdz level of theory.
The optimized parameters (bond lengths/Å and bond angles/degrees) and dipole moments (μ/Debye) of E-HC≡CCH=NH (I) and Z-HC≡CCH=NH (II) using MP2, B3LYP and CCSD methods with 6-311++G** and aug-cc-pvdz basis sets.
| Method | Basis Set | H-C | C≡C | C-C | C=N | NH | CH | CCN | CNH | µ/Debye |
|---|---|---|---|---|---|---|---|---|---|---|
| MP2 | 6-311++G** | 1.065 | 1.221 | 1.438 | 1.288 | 1.024 | 1.095 | 120.95 | 108.61 | 2.27 |
| B3LYP | 6-311++G** | 1.063 | 1.204 | 1.432 | 1.276 | 1.022 | 1.096 | 121.95 | 110.11 | 2.07 |
| CCSD | 6-311++G** | 1.066 | 1.212 | 1.448 | 1.281 | 1.023 | 1.095 | 121.13 | 109.11 | 2.05 |
| Experimental a | - | - | - | - | - | - | - | - | 1.90 | |
| MP2 | 6-311++G** | 1.066 | 1.222 | 1.440 | 1.289 | 1.025 | 1.091 | 125.79 | 108.82 | 2.58 |
| B3LYP | 6-311++G** | 1.063 | 1.205 | 1.434 | 1.276 | 1.023 | 1.091 | 126.45 | 110.71 | 2.41 |
| CCSD | 6-311++G** | 1.067 | 1.212 | 1.452 | 1.281 | 1.024 | 1.091 | 125.68 | 109.52 | 2.32 |
| Experimental b | 1.057 | 1.207 | 1.431 | 1.286 | 1.039 | 1.101 | 125.38 | 108.89 | 2.15 | |
a Experimental dipole moment of I taken from [29]; b microwave substitution structure of II taken from [30] and experimental dipole moment of II taken from [29]. The first seven lines of data are for I; the second seven lines of data are for II.
The optimized bond lengths (Å) and bond angles (deg.) of CH2=CHC≡N (IV) using MP2, B3LYP and CCSD methods with 6-311++G** and aug-cc-pvdz basis sets.
| Method Basis Set | MP2 | B3LYP | CCSD | Expt. a,b | |||
|---|---|---|---|---|---|---|---|
| 6-311++G** | aug-cc-pvdz | 6-311++G** | aug-cc-pvdz | 6-311++G** | aug-cc-pvdz | ||
| C-Ht | 1.085 | 1.092 | 1.083 | 1.089 | 1.086 | 1.093 | 1.097 |
| C-Hc | 1.084 | 1.092 | 1.083 | 1.090 | 1.086 | 1.094 | 1.093 |
| C=C | 1.344 | 1.353 | 1.335 | 1.341 | 1.342 | 1.351 | 1.343 |
| C-Hu | 1.086 | 1.093 | 1.085 | 1.092 | 1.086 | 1.094 | 1.085 |
| C-C | 1.435 | 1.443 | 1.428 | 1.433 | 1.445 | 1.454 | 1.429 |
| C≡N | 1.177 | 1.189 | 1.156 | 1.163 | 1.162 | 1.172 | 1.160 |
| CCHt | 120.28 | 120.17 | 120.56 | 120.46 | 120.4 | 120.4 | 118.5 |
| CCHc | 121.44 | 121.32 | 121.79 | 121.78 | 121.7 | 121.6 | 120.3 |
| C=CHu | 121.39 | 121.31 | 121.24 | 121.21 | 121.9 | 121.8 | 121.6 |
| CCC | 122.11 | 122.20 | 123.11 | 123.11 | 122.1 | 122.1 | 122.2 |
| CCN | 179.05 | 179.10 | 178.72 | 178.46 | 179.0 | 179.0 | 178.4 |
| µ/Debye | 4.47 | 4.51 | 4.05 | 4.04 | 3.90 | 3.95 | 3.92 |
a Microwave substitution structure taken from [24]; b Experimental dipole moment taken from [25].
Optimized parameters (bond lengths in Å and bond angles and dihedral angles in degrees of Z-HC≡CCH=NH(II) a, Transition States (TS1 and TS2), the Intermediate, CH2=C=C=NH(III) and CH2=CHC≡N(IV) b which have been calculated using B3LYP/aug-cc-pvdz level of theory.
| Parameter | II | TS2 | III | TS1 | IV |
|---|---|---|---|---|---|
| H2–C1 | 1.063 (1.057) | 1.097 | 1.088 | 1.095 | 1.090 (1.089) |
| C1–C3 | 1.205 (1.207) | 1.317 | 1.314 | 1.332 | 1.341 (1.343) |
| C3–C4 | 1.434 (1.431) | 1.332 | 1.314 | 1.332 | 1.433 (1.429) |
| C4–N6 | 1.276 (1.286) | 1.236 | 1.238 | 1.232 | 1.163 (1.163) |
| N6–H7 | 1.024 (1.039) | 1.023 | 1.022 | 1.585 | - |
| C4–H5 | 1.092 (1.101) | 1.433 | - | 1.096 | 1.092(1.086) |
| C4C5N6 | 126.5 (125.3) | 174.7 | 172.75 | 161.9 | 178.4(178.4) |
| C5N6H7 | 110.7 (108.9) | 45.8 | 114.2 | 45.8 | - |
| H3C1N7H9 | 180.00 | −179.9 | 0.00 | −179.9 | - |
| C4C1N7H9 | −0.004 | −179.9 | 180.0 | −179.9 | - |
Values between parentheses are: a taken from [30]; b taken from [22].
Figure 2The numbering of atoms for the Intermediate (III) and Transition States (TS1 and TS2) together with their optimized bond lengths (Å) and angles (degrees) using B3LYP /aug-cc-pvdz level of theory.
MP2, B3LYP and CCSD methods with 6-311++G** and aug-cc-pvdz basis sets zero-point Reaction Energies, Enthalpies, Entropies, Free Energies Changes and Equilibrium Constants at 298.15 K for the equilibrium E-HCCCH=NH ↔ Z-HCCCH=NH.
| Method | Basis Set | Δ | Δ | Δ | Δ |
|
|---|---|---|---|---|---|---|
| MP2 | 6-311++G** | −2.046 | −2.138 | −0.282 | −2.054 | 2.291 |
| aug-cc-pvdz | −3.707 | −3.452 | +2.484 | −4.192 | 5.425 | |
| B3LYP | 6-311++G** | −2.920 | −2.958 | +0.364 | −3.067 | 3.445 |
| aug-cc-pvdz | −3.063 | −2.954 | +1.375 | −3.364 | 3.885 | |
| CCSD | 6-311++G** | −1.707 | −1.757 | +0.126 | −1.795 | 2.063 |
| aug-cc-pvdz | −3.084 | −2.887 | +2.006 | −3.485 | 4.080 |
MP2, B3LYP and CCSD methods with 6-311++G** and aug-cc-pvdz basis sets zero-point Reaction Energies, Enthalpies, Entropies, Free Energies Changes and Equilibrium Constants at 298.15 K for the equilibrium Z-HCCCH=NH ↔ CH2=CHC≡N.
| Method | Basis Set | Δ | Δ | Δ | Δ |
|
|---|---|---|---|---|---|---|
| MP2 | 6-311++G** | −147.507 | −148.189 | −4.042 | −146.984 | 5.648 × 1025 |
| aug-cc-pvdz | −147.436 | −148.499 | −6.571 | −146.540 | 4.723 × 1025 | |
| B3LYP | 6-311++G** | −138.449 | −138.674 | −2.130 | −138.039 | 1.530 × 1024 |
| aug-cc-pvdz | −137.336 | −138.076 | −4.236 | −136.813 | 9.333 × 1023 | |
| CCSD | 6-311++G** | −147.535 | −148.073 | −3.029 | −147.170 | 6.088 × 1025 |
| aug-cc-pvdz | −148.375 | −149.304 | −5.618 | −147.629 | 7.326 × 1025 |
Zero-point electronic energies (a.u.) and activation energies (kcal/mol) of the tautomerization of Z-prop-2-ynylidineamine (HC≡CCH=NH) (II) to form vinyl cyanide (CH2=CHC≡N) (IV) through the Transition State 1 (TS1), (prop-1,2-diene-1-imine, CH2=C=C=NH) (III) and Transition State 2 (TS2).
| Method | Basis Set | II | TS1 | III | TS2 | IV |
|---|---|---|---|---|---|---|
| MP2 | 6-311++G** | −170.27730 | −170.148485 | −170.263702 | −170.172449 | −170.33348 |
| Activ. Energy | 80.83 | - | 57.26 | - | 101.05 | |
| aug-cc-pvdz | −170.24374 | −170.117638 | −170.230527 | −170.141694 | −170.29989 | |
| Activ. Energy | 79.13 | - | 55.74 | - | 99.27 | |
| B3LYP | 6-311++G** | −170.82975 | −170.723374 | −170.829238 | −170.728235 | −170.88290 |
| Activ. Energy | 66.75 | - | 63.38 | - | 97.05 | |
| aug-cc-pvdz | −170.80018 | −170.696274 | −170.799846 | −170.702204 | −170.85343 | |
| Activ. Energy | 65.20 | - | 61.27 | - | 94.90 | |
| CCSD | 6-311++G** | −170.29782 | −170.18736 | −170.286399 | −170.197429 | −170.35401 |
| Activ. Energy | 69.31 | - | 55.83 | - | 98.26 | |
| aug-cc-pvdz | −170.26630 | −170.15642 | −170.255619 | −170.168856 | −170.32282 | |
| Activ. Energy | 68.95 | - | 54.44 | - | 96.61 |
Figure 3Schematic potential energy profile showing the activation energies (kcal/mol) for the tautomerization of II and IV, which were calculated by using the elected levels of theory.
Figure 4The NBO charge distribution of (a) Z-prop-2-ynylideneamine (II); (b) TS2; (c) vinyl cyanide (IV) and (d) TS1 which were calculated using B3LYP/aug-cc-pvdz level of theory. The migrating hydrogen atom acquired a positive charge (+0.213e) in II and an intensified charge (+0.317e) in TS2 while it acquired a positive charge (+0.230e) in IV that was condensed (+0.445e) in TS1.
Second order perturbation (E(2)) estimation of the hyperconjugative energies (kcal/mol) a of Z-prop-2-ynylideneamine (II), intermediate (III), vinyl cyanide (IV), and Transition States (TS1 and TS2) which were calculated using B3LYP/aug-cc-pvdz level of theory.
| Interaction | II | III | IV | Interaction | TS1 | TS2 |
|---|---|---|---|---|---|---|
| σC1-H2 → σ*C1-C3(σ*C4-H5) | 5.62 | 6.50 | (5.13) | σC1-C5 → σ*C3-N4 | 5.93 | 6.54 |
| σC1-H2 → σ*C3-C4 | 6.62 | 3.72 | 6.38 | πC1-C5 → π*C3-N4 | 25.16 | 53.53 |
| σC1-C3 → σ*C3-C4 | 6.31 | 11.74 | <0.50 | σC3-H2 → σ*C3-N4 | 119.30 | <0.50 |
| σC1-C3 → σ*C4-N6 | 0.67 | 5.68 | 5.28 | σC1-H7 → n*C3 | <0.50 | 269.74 |
| πC1-C3 → π*C4-N6 | 16.02 | 33.45 | 18.11 | σC5-H7 → σ*C1-C3 | 7.24 | 11.11 |
| σC3-c4 → σ*C1-C3 | 9.64 | 9.04 | <0.50 | nN → σ*C1-C3 | 11.76 | 10.71 |
| σC3-C4 → σ*C4-N6 | 1.22 | 7.33 | 4.84 | π*C3-N4 → π*C1-C5 | 40.66 | 28.89 |
| σC4-N6 → σ*C3-C4 | 1.49 | 15.31 | 4.52 | σ*C1-N4 → σ*C1-C3 | 30.39 | <0.50 |
| πC6-N7 → π*C1-C4 | <0.50 | <0.50 | 9.89 | σC1-C5 → σ*C1-C3 | <0.50 | 11.28 |
| nN → σ*C3-C4 | 13.03 | 5.95 | 12.26 | σ*C1-N4 → σC1-N4 | 10.04 | <0.50 |
| Total | 61.12 | 99.22 | 67.41 | Total | 251.48 | 393.30 |
a Threshold for printing: 0.5 kcal/mol but considered 0.50 kcal/mol when working the total.
NBO analyses of the total SCF, deletion and delocalization energies (a.u.) of Z-prop-2-ynylidemeamine (II), prop-1,2-diene-1-imine (III) and vinyl cyanide (IV) which were calculated by using HF and B3LYP methods with 6-311++G** and aug-cc-pvdz basis sets.
| Level of Theory | Energy/a.u. | II | III | Δ | IV | Δ |
|---|---|---|---|---|---|---|
| RHF/6-311++G** | Total SCF energy (full) | −169.752021 | −169.737351 | +9.20 | −169.8113786 | +37.25 |
| Energy of Deletion (L) | −169.441285 | −169.302242 | +87.25 | −169.5367135 | +59.88 | |
| Delocalization energy | −0.310736 | −0.435109 | −78.05 | −0.274665 | −22.63 | |
| RHF/aug-cc-pvdz | Total SCF energy (full) | −169.729776 | −169.715694 | +8.84 | −169.7894057 | +37.42 |
| Energy of Deletion (L) | −169.439244 | −169.301429 | +86.48 | −169.5286064 | +56.08 | |
| Delocalization energy | −0.290532 | −0.414266 | −77.64 | −0.260799 | −18.66 | |
| B3LYP/6-311++G** | Total SCF energy (full) | −170.829746 | −170.829238 | +0.32 | −170.8829004 | +33.35 |
| Energy of Deletion (L) | −170.551258 | −170.431655 | +75.05 | −170.632217 | +50.80 | |
| Delocalization energy | −0.278488 | −0.397583 | −74.73 | −0.250683 | −17.45 | |
| B3LYP/aug-cc-pvdz | Total SCF energy (full) | −170.800179 | −170.799846 | +0.21 | −170.8534328 | +33.41 |
| Energy of Deletion (L) | −170.500599 | −170.420204 | +50.45 | −170.6127173 | +70.35 | |
| Delocalization energy | −0.299580 | −0.379641 | −50.24 | −0.240715 | −36.94 |
a ∆E1 = EIII − EII (kcal/mol); b ∆E2 = EII − EIV (kcal/mol).