Literature DB >> 24942742

Maturation of Rhizobium leguminosarum hydrogenase in the presence of oxygen requires the interaction of the chaperone HypC and the scaffolding protein HupK.

Marta Albareda1, Luis F Pacios2, Hamid Manyani1, Luis Rey1, Belén Brito1, Juan Imperial3, Tomás Ruiz-Argüeso1, Jose M Palacios4.   

Abstract

[NiFe] hydrogenases are key enzymes for the energy and redox metabolisms of different microorganisms. Synthesis of these metalloenzymes involves a complex series of biochemical reactions catalyzed by a plethora of accessory proteins, many of them required to synthesize and insert the unique NiFe(CN)2CO cofactor. HypC is an accessory protein conserved in all [NiFe] hydrogenase systems and involved in the synthesis and transfer of the Fe(CN)2CO cofactor precursor. Hydrogenase accessory proteins from bacteria-synthesizing hydrogenase in the presence of oxygen include HupK, a scaffolding protein with a moderate sequence similarity to the hydrogenase large subunit and proposed to participate as an intermediate chaperone in the synthesis of the NiFe cofactor. The endosymbiotic bacterium Rhizobium leguminosarum contains a single hydrogenase system that can be expressed under two different physiological conditions: free-living microaerobic cells (∼ 12 μm O2) and bacteroids from legume nodules (∼ 10-100 nm O2). We have used bioinformatic tools to model HupK structure and interaction of this protein with HypC. Site-directed mutagenesis at positions predicted as critical by the structural analysis have allowed the identification of HupK and HypC residues relevant for the maturation of hydrogenase. Mutant proteins altered in some of these residues show a different phenotype depending on the physiological condition tested. Modeling of HypC also predicts the existence of a stable HypC dimer whose presence was also demonstrated by immunoblot analysis. This study widens our understanding on the mechanisms for metalloenzyme biosynthesis in the presence of oxygen.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Hydrogenase; Metalloenzyme; Molecular Modeling; Nitrogen Fixation; Scaffold Protein; [NiFe] Cofactor

Mesh:

Substances:

Year:  2014        PMID: 24942742      PMCID: PMC4118084          DOI: 10.1074/jbc.M114.577403

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

Review 2.  Maturation of [NiFe]-hydrogenases in Escherichia coli.

Authors:  Lucia Forzi; R Gary Sawers
Journal:  Biometals       Date:  2007-01-11       Impact factor: 2.949

3.  Concerted action of two novel auxiliary proteins in assembly of the active site in a membrane-bound [NiFe] hydrogenase.

Authors:  Marcus Ludwig; Torsten Schubert; Ingo Zebger; Nattawadee Wisitruangsakul; Miguel Saggu; Angelika Strack; Oliver Lenz; Peter Hildebrandt; Bärbel Friedrich
Journal:  J Biol Chem       Date:  2008-11-18       Impact factor: 5.157

Review 4.  [NiFe] hydrogenases: a common active site for hydrogen metabolism under diverse conditions.

Authors:  Hannah S Shafaat; Olaf Rüdiger; Hideaki Ogata; Wolfgang Lubitz
Journal:  Biochim Biophys Acta       Date:  2013-02-08

5.  Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation.

Authors:  N Drapal; A Bock
Journal:  Biochemistry       Date:  1998-03-03       Impact factor: 3.162

6.  Computational study of the Fe(CN)2CO cofactor and its binding to HypC protein.

Authors:  Marta Albareda; Jose-Manuel Palacios; Juan Imperial; Luis F Pacios
Journal:  J Phys Chem B       Date:  2013-10-21       Impact factor: 2.991

7.  Oxygen-tolerant H2 oxidation by membrane-bound [NiFe] hydrogenases of ralstonia species. Coping with low level H2 in air.

Authors:  Marcus Ludwig; James A Cracknell; Kylie A Vincent; Fraser A Armstrong; Oliver Lenz
Journal:  J Biol Chem       Date:  2008-11-06       Impact factor: 5.157

8.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

9.  Dual role of HupF in the biosynthesis of [NiFe] hydrogenase in Rhizobium leguminosarum.

Authors:  Marta Albareda; Hamid Manyani; Juan Imperial; Belén Brito; Tomás Ruiz-Argüeso; August Böck; Jose-Manuel Palacios
Journal:  BMC Microbiol       Date:  2012-11-08       Impact factor: 3.605

10.  The SWISS-MODEL Repository and associated resources.

Authors:  Florian Kiefer; Konstantin Arnold; Michael Künzli; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2008-10-18       Impact factor: 16.971

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  1 in total

1.  Biosynthesis of Salmonella enterica [NiFe]-hydrogenase-5: probing the roles of system-specific accessory proteins.

Authors:  Lisa Bowman; Jonathan Balbach; Julia Walton; Frank Sargent; Alison Parkin
Journal:  J Biol Inorg Chem       Date:  2016-08-26       Impact factor: 3.358

  1 in total

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