Literature DB >> 24940771

How fast is your camera? Timescales for molecular motion and their role in restraining molecular dynamics.

Tod D Romo1, Alan Grossfield2.   

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Year:  2014        PMID： 24940771      PMCID： PMC4070275          DOI： 10.1016/j.bpj.2014.05.022

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  14 in total

1.  Experimental verification of lipid bilayer structure through multi-scale modeling.

Authors:  Jason D Perlmutter; Jonathan N Sachs
Journal:  Biochim Biophys Acta       Date:  2009-07-17

Review 2.  An ensemble dynamics approach to decipher solid-state NMR observables of membrane proteins.

Authors:  Wonpil Im; Sunhwan Jo; Taehoon Kim
Journal:  Biochim Biophys Acta       Date:  2011-08-08

3.  On the statistical equivalence of restrained-ensemble simulations with the maximum entropy method.

Authors:  Benoît Roux; Jonathan Weare
Journal:  J Chem Phys       Date:  2013-02-28       Impact factor: 3.488

4.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

Authors:  Alfonso De Simone; Kaustubh R Mote; Gianluigi Veglia
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

5.  Indolicidin binding induces thinning of a lipid bilayer.

Authors:  Chris Neale; Jenny C Y Hsu; Christopher M Yip; Régis Pomès
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

6.  Retinal ligand mobility explains internal hydration and reconciles active rhodopsin structures.

Authors:  Nicholas Leioatts; Blake Mertz; Karina Martínez-Mayorga; Tod D Romo; Michael C Pitman; Scott E Feller; Alan Grossfield; Michael F Brown
Journal:  Biochemistry       Date:  2014-01-08       Impact factor: 3.162

7.  Dynamic structure of retinylidene ligand of rhodopsin probed by molecular simulations.

Authors:  Pick-Wei Lau; Alan Grossfield; Scott E Feller; Michael C Pitman; Michael F Brown
Journal:  J Mol Biol       Date:  2007-06-26       Impact factor: 5.469

8.  The effect of cholesterol on short- and long-chain monounsaturated lipid bilayers as determined by molecular dynamics simulations and X-ray scattering.

Authors:  Norbert Kucerka; Jason D Perlmutter; Jianjun Pan; Stephanie Tristram-Nagle; John Katsaras; Jonathan N Sachs
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

9.  The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins.

Authors:  Barbara Richter; Joerg Gsponer; Péter Várnai; Xavier Salvatella; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2007-01-16       Impact factor: 2.835

10.  Determination of Conformational Equilibria in Proteins Using Residual Dipolar Couplings.

Authors:  Alfonso De Simone; Rinaldo W Montalvao; Michele Vendruscolo
Journal:  J Chem Theory Comput       Date:  2011-10-10       Impact factor: 6.006
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  1 in total

Review 1.  Information flow and protein dynamics: the interplay between nuclear magnetic resonance spectroscopy and molecular dynamics simulations.

Authors:  Nina Pastor; Carlos Amero
Journal:  Front Plant Sci       Date:  2015-05-05       Impact factor: 5.753
  1 in total

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