Literature DB >> 24940293

5-[(2-Hy-droxy-eth-yl)(meth-yl)amino]-thio-phene-2-carbaldehyde.

Xian-Shun Sun1, Nan-Qi Shao1, Dan-Dan Li1.   

Abstract

In the title compound, C8H11NO2S, the aldehyde group is approximately coplanar with the thio-phene ring [maximum deviation = 0.023 (2) Å]. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds into supra-molecular chains propagating along the a-axis direction.

Entities:  

Year:  2014        PMID: 24940293      PMCID: PMC4050996          DOI: 10.1107/S1600536814012021

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications of thio­phene derivatives, see: Encinas (2002 ▶). For a related thio­phene derivative, see: Perašínová et al. (2006 ▶).

Experimental

Crystal data

C8H11NO2S M = 185.24 Orthorhombic, a = 15.764 (5) Å b = 5.136 (5) Å c = 11.028 (5) Å V = 892.9 (10) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 5828 measured reflections 1564 independent reflections 1514 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.067 S = 1.08 1564 reflections 111 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.13 e Å−3 Absolute structure: Flack (1983 ▶), 756 Friedel pairs Absolute structure parameter: −0.03 (7) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, Global. DOI: 10.1107/S1600536814012021/xu5786sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814012021/xu5786Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814012021/xu5786Isup3.cml CCDC reference: 996513 Additional supporting information: crystallographic information; 3D view; checkCIF report
C8H11NO2SF(000) = 392
Mr = 185.24Dx = 1.378 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2c -2acCell parameters from 3223 reflections
a = 15.764 (5) Åθ = 2.6–26.8°
b = 5.136 (5) ŵ = 0.32 mm1
c = 11.028 (5) ÅT = 293 K
V = 892.9 (10) Å3Block, yellow
Z = 40.30 × 0.20 × 0.20 mm
Bruker SMART 1000 CCD area-detector diffractometer1514 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
Graphite monochromatorθmax = 25.0°, θmin = 2.6°
phi and ω scansh = −17→18
5828 measured reflectionsk = −5→6
1564 independent reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0417P)2 + 0.0567P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1564 reflectionsΔρmax = 0.14 e Å3
111 parametersΔρmin = −0.13 e Å3
1 restraintAbsolute structure: Flack (1983), 756 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.03 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.53676 (3)0.28672 (8)0.22080 (5)0.04276 (14)
O10.32880 (9)0.3310 (3)0.35492 (15)0.0575 (4)
H10.28880.24790.32740.086*
N10.40014 (10)0.5376 (3)0.13076 (14)0.0446 (4)
C40.45817 (10)0.3498 (4)0.11400 (16)0.0385 (4)
C50.46620 (12)0.1849 (4)0.01313 (18)0.0459 (5)
H50.43010.1889−0.05350.055*
C60.53411 (13)0.0157 (4)0.02439 (17)0.0501 (5)
H60.5479−0.1056−0.03510.060*
C70.57958 (11)0.0402 (4)0.12977 (19)0.0457 (4)
O20.68678 (9)−0.0828 (4)0.26743 (18)0.0723 (5)
C20.39359 (13)0.6822 (3)0.24362 (18)0.0460 (5)
H2A0.38700.86580.22510.055*
H2B0.44590.66170.28880.055*
C10.33673 (14)0.5845 (5)0.0376 (2)0.0583 (6)
H1A0.36440.6127−0.03890.087*
H1B0.30400.73560.05850.087*
H1C0.29990.43620.03150.087*
C80.64980 (13)−0.1077 (4)0.1692 (2)0.0553 (5)
H80.6700−0.23510.11670.066*
C30.32038 (12)0.5959 (4)0.32204 (19)0.0490 (5)
H3A0.31840.70220.39470.059*
H3B0.26760.62040.27830.059*
U11U22U33U12U13U23
S10.0454 (2)0.0426 (2)0.0403 (2)0.00002 (17)−0.0065 (2)−0.0035 (3)
O10.0509 (8)0.0526 (8)0.0689 (10)−0.0042 (7)−0.0065 (8)0.0180 (7)
N10.0451 (8)0.0484 (9)0.0403 (7)0.0028 (7)−0.0043 (7)0.0008 (7)
C40.0413 (10)0.0403 (9)0.0338 (9)−0.0082 (7)0.0010 (7)0.0035 (8)
C50.0524 (12)0.0537 (12)0.0317 (9)−0.0072 (9)0.0002 (8)−0.0023 (8)
C60.0592 (13)0.0510 (12)0.0400 (10)−0.0036 (9)0.0120 (9)−0.0060 (9)
C70.0433 (10)0.0437 (10)0.0500 (9)−0.0024 (8)0.0106 (8)0.0003 (8)
O20.0587 (9)0.0613 (10)0.0969 (13)0.0069 (8)−0.0212 (9)0.0000 (9)
C20.0446 (9)0.0380 (9)0.0555 (14)−0.0031 (7)0.0037 (8)−0.0050 (8)
C10.0518 (12)0.0673 (15)0.0558 (12)0.0036 (11)−0.0106 (9)0.0090 (10)
C80.0484 (11)0.0469 (12)0.0705 (13)0.0010 (10)0.0064 (12)0.0012 (10)
C30.0494 (11)0.0427 (10)0.0550 (12)0.0026 (9)0.0057 (9)−0.0005 (9)
S1—C41.7398 (18)C7—C81.411 (3)
S1—C71.751 (2)O2—C81.237 (3)
O1—C31.414 (3)C2—C31.509 (3)
O1—H10.8200C2—H2A0.9700
N1—C41.342 (3)C2—H2B0.9700
N1—C21.453 (2)C1—H1A0.9600
N1—C11.454 (3)C1—H1B0.9600
C4—C51.404 (3)C1—H1C0.9600
C5—C61.384 (3)C8—H80.9300
C5—H50.9300C3—H3A0.9700
C6—C71.371 (3)C3—H3B0.9700
C6—H60.9300
C4—S1—C791.21 (10)C3—C2—H2A108.9
C3—O1—H1109.5N1—C2—H2B108.9
C4—N1—C2122.26 (16)C3—C2—H2B108.9
C4—N1—C1119.38 (17)H2A—C2—H2B107.7
C2—N1—C1118.15 (17)N1—C1—H1A109.5
N1—C4—C5127.17 (17)N1—C1—H1B109.5
N1—C4—S1121.74 (14)H1A—C1—H1B109.5
C5—C4—S1111.08 (15)N1—C1—H1C109.5
C6—C5—C4112.17 (18)H1A—C1—H1C109.5
C6—C5—H5123.9H1B—C1—H1C109.5
C4—C5—H5123.9O2—C8—C7125.7 (2)
C7—C6—C5114.99 (18)O2—C8—H8117.1
C7—C6—H6122.5C7—C8—H8117.1
C5—C6—H6122.5O1—C3—C2110.98 (15)
C6—C7—C8128.45 (19)O1—C3—H3A109.4
C6—C7—S1110.53 (15)C2—C3—H3A109.4
C8—C7—S1120.99 (17)O1—C3—H3B109.4
N1—C2—C3113.27 (16)C2—C3—H3B109.4
N1—C2—H2A108.9H3A—C3—H3B108.0
C2—N1—C4—C5174.75 (18)C5—C6—C7—C8177.8 (2)
C1—N1—C4—C50.2 (3)C5—C6—C7—S1−0.2 (2)
C2—N1—C4—S1−6.4 (2)C4—S1—C7—C60.14 (15)
C1—N1—C4—S1179.03 (15)C4—S1—C7—C8−178.05 (16)
C7—S1—C4—N1−179.10 (15)C4—N1—C2—C3−103.3 (2)
C7—S1—C4—C5−0.06 (15)C1—N1—C2—C371.4 (2)
N1—C4—C5—C6178.94 (18)C6—C7—C8—O2−177.4 (2)
S1—C4—C5—C60.0 (2)S1—C7—C8—O20.5 (3)
C4—C5—C6—C70.1 (2)N1—C2—C3—O160.7 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.932.751 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O2i 0.821.932.751 (2)174

Symmetry code: (i) .

  2 in total

1.  Electronic energy transfer and collection in luminescent molecular rods containing ruthenium(II) and osmium(II) 2,2':6',2"-terpyridine complexes linked by thiophene-2,5-diyl spacers.

Authors:  Susana Encinas; Lucia Flamigni; Francesco Barigelletti; Edwin C Constable; Catherine E Housecroft; Emma R Schofield; Egbert Figgemeier; Dieter Fenske; Markus Neuburger; Johannes G Vos; Margareta Zehnder
Journal:  Chemistry       Date:  2002-01-04       Impact factor: 5.236

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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