Literature DB >> 24940227

4-Phenyl-1,2,4-tri-aza-spiro-[4.6]undec-1-ene-3-thione.

Shaaban K Mohamed1, Joel T Mague2, Mehmet Akkurt3, Alaa A Hassan4, Mustafa R Albayati5.   

Abstract

In the title compound, C14H17N3S, the plane of the phenyl ring makes a dihedral angle of 74.90 (4)° with that of the tri-aza-thione ring (r.m.s. deviation = 0.001 Å), while the seven-membered ring adopts a twist-chair conformation. No specific intermolecular interactions are discerned in the crystal packing.

Entities:  

Year:  2014        PMID: 24940227      PMCID: PMC4051002          DOI: 10.1107/S1600536814009817

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For various pharmaceutical properties of spiro compounds, see: Chin et al. (2008 ▶); Thadhaney et al. (2010 ▶). For industrial uses of heterocyclic spiro compounds, see: Sarma et al. (2010 ▶). For the crystal structures of two similar compounds, see: Akkurt et al. (2013 ▶); Mague et al. (2014 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C14H17N3S M = 259.36 Triclinic, a = 9.0578 (5) Å b = 9.1324 (5) Å c = 9.4637 (5) Å α = 88.2940 (8)° β = 79.0690 (7)° γ = 61.6640 (6)° V = 674.89 (6) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 150 K 0.28 × 0.23 × 0.06 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.85, T max = 0.98 12510 measured reflections 3508 independent reflections 3125 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.096 S = 1.04 3508 reflections 163 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Bruker, 2013 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814009817/hg5394sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814009817/hg5394Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814009817/hg5394Isup3.cml CCDC reference: 1000439 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H17N3SZ = 2
Mr = 259.36F(000) = 276
Triclinic, P1Dx = 1.276 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0578 (5) ÅCell parameters from 9063 reflections
b = 9.1324 (5) Åθ = 2.2–29.1°
c = 9.4637 (5) ŵ = 0.23 mm1
α = 88.2940 (8)°T = 150 K
β = 79.0690 (7)°Plate, orange
γ = 61.6640 (6)°0.28 × 0.23 × 0.06 mm
V = 674.89 (6) Å3
Bruker SMART APEX CCD diffractometer3508 independent reflections
Radiation source: fine-focus sealed tube3125 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 8.3660 pixels mm-1θmax = 29.1°, θmin = 2.2°
φ and ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −12→12
Tmin = 0.85, Tmax = 0.98l = −12→12
12510 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0469P)2 + 0.2315P] where P = (Fo2 + 2Fc2)/3
3508 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.18135 (4)0.44697 (4)0.80140 (3)0.0246 (1)
N10.85249 (12)0.58855 (11)0.76728 (10)0.0161 (2)
N20.75975 (13)0.84504 (12)0.87544 (11)0.0222 (3)
N30.91495 (13)0.75963 (13)0.87953 (11)0.0223 (3)
C10.98219 (14)0.59098 (14)0.81285 (12)0.0180 (3)
C20.69598 (14)0.75078 (13)0.80402 (12)0.0169 (3)
C30.85298 (13)0.44117 (13)0.71782 (12)0.0165 (3)
C40.85413 (15)0.32566 (14)0.81669 (13)0.0205 (3)
C50.84438 (16)0.18734 (15)0.77211 (14)0.0255 (3)
C60.83537 (18)0.16576 (16)0.63011 (15)0.0292 (4)
C70.83794 (18)0.28004 (17)0.53131 (14)0.0294 (4)
C80.84735 (15)0.41916 (15)0.57489 (12)0.0219 (3)
C90.55281 (15)0.73871 (14)0.91260 (12)0.0202 (3)
C100.42376 (16)0.71324 (16)0.84612 (13)0.0238 (3)
C110.27415 (16)0.87693 (17)0.81639 (14)0.0267 (3)
C120.31779 (16)0.96808 (17)0.69115 (14)0.0273 (3)
C130.46872 (15)0.99887 (15)0.69690 (13)0.0232 (3)
C140.64134 (14)0.83880 (14)0.66771 (12)0.0192 (3)
H40.861500.340800.913500.0250*
H50.843900.107700.838800.0310*
H60.827400.071800.600300.0350*
H70.833300.263500.434000.0350*
H80.849900.497800.507800.0260*
H9A0.606400.644900.973100.0240*
H9B0.489300.842200.977000.0240*
H10A0.484100.643400.754500.0280*
H10B0.377900.652000.912500.0280*
H11A0.183900.852900.796800.0320*
H11B0.225500.952800.904900.0320*
H12A0.215501.077000.688800.0330*
H12B0.343800.902400.599900.0330*
H13A0.451201.050500.793300.0280*
H13B0.471401.078600.624500.0280*
H14A0.730500.866400.617700.0230*
H14B0.635000.760600.601900.0230*
U11U22U33U12U13U23
S10.0207 (2)0.0261 (2)0.0266 (2)−0.0094 (1)−0.0087 (1)0.0025 (1)
N10.0189 (4)0.0140 (4)0.0172 (4)−0.0087 (3)−0.0049 (3)0.0000 (3)
N20.0285 (5)0.0188 (5)0.0241 (5)−0.0141 (4)−0.0079 (4)−0.0009 (4)
N30.0278 (5)0.0208 (5)0.0241 (5)−0.0148 (4)−0.0090 (4)0.0004 (4)
C10.0234 (5)0.0190 (5)0.0158 (5)−0.0129 (4)−0.0058 (4)0.0023 (4)
C20.0203 (5)0.0136 (5)0.0185 (5)−0.0089 (4)−0.0049 (4)−0.0011 (4)
C30.0177 (5)0.0148 (5)0.0185 (5)−0.0092 (4)−0.0026 (4)−0.0023 (4)
C40.0234 (5)0.0192 (5)0.0199 (5)−0.0112 (4)−0.0037 (4)0.0006 (4)
C50.0301 (6)0.0187 (5)0.0303 (6)−0.0149 (5)−0.0033 (5)0.0030 (5)
C60.0374 (7)0.0225 (6)0.0336 (7)−0.0193 (5)−0.0051 (5)−0.0056 (5)
C70.0412 (7)0.0293 (7)0.0226 (6)−0.0205 (6)−0.0059 (5)−0.0058 (5)
C80.0290 (6)0.0212 (5)0.0176 (5)−0.0141 (5)−0.0033 (4)−0.0003 (4)
C90.0230 (5)0.0207 (5)0.0161 (5)−0.0102 (4)−0.0024 (4)0.0002 (4)
C100.0254 (6)0.0265 (6)0.0236 (6)−0.0168 (5)−0.0015 (5)−0.0014 (5)
C110.0209 (5)0.0338 (7)0.0259 (6)−0.0137 (5)−0.0034 (5)−0.0030 (5)
C120.0221 (6)0.0311 (6)0.0259 (6)−0.0093 (5)−0.0082 (5)0.0009 (5)
C130.0248 (6)0.0188 (5)0.0246 (6)−0.0085 (4)−0.0076 (5)0.0031 (4)
C140.0214 (5)0.0182 (5)0.0191 (5)−0.0100 (4)−0.0050 (4)0.0032 (4)
S1—C11.6364 (13)C13—C141.5325 (18)
N1—C11.3357 (18)C4—H40.9500
N1—C21.4750 (15)C5—H50.9500
N1—C31.4359 (15)C6—H60.9500
N2—N31.2506 (17)C7—H70.9500
N2—C21.4786 (17)C8—H80.9500
N3—C11.4707 (15)C9—H9A0.9900
C2—C91.5406 (19)C9—H9B0.9900
C2—C141.5356 (16)C10—H10A0.9900
C3—C41.3867 (16)C10—H10B0.9900
C3—C81.3874 (16)C11—H11A0.9900
C4—C51.3904 (18)C11—H11B0.9900
C5—C61.387 (2)C12—H12A0.9900
C6—C71.3859 (19)C12—H12B0.9900
C7—C81.392 (2)C13—H13A0.9900
C9—C101.537 (2)C13—H13B0.9900
C10—C111.532 (2)C14—H14A0.9900
C11—C121.5264 (19)C14—H14B0.9900
C12—C131.531 (2)
C1—N1—C2110.52 (10)C6—C7—H7120.00
C1—N1—C3124.94 (10)C8—C7—H7120.00
C2—N1—C3123.30 (11)C3—C8—H8120.00
N3—N2—C2112.14 (10)C7—C8—H8121.00
N2—N3—C1110.00 (11)C2—C9—H9A108.00
S1—C1—N1131.05 (9)C2—C9—H9B108.00
S1—C1—N3122.55 (10)C10—C9—H9A108.00
N1—C1—N3106.39 (10)C10—C9—H9B108.00
N1—C2—N2100.93 (10)H9A—C9—H9B107.00
N1—C2—C9112.71 (9)C9—C10—H10A109.00
N1—C2—C14111.24 (9)C9—C10—H10B109.00
N2—C2—C9108.93 (9)C11—C10—H10A109.00
N2—C2—C14107.14 (9)C11—C10—H10B109.00
C9—C2—C14114.78 (11)H10A—C10—H10B108.00
N1—C3—C4118.50 (10)C10—C11—H11A108.00
N1—C3—C8120.00 (10)C10—C11—H11B108.00
C4—C3—C8121.47 (11)C12—C11—H11A108.00
C3—C4—C5119.06 (11)C12—C11—H11B108.00
C4—C5—C6119.93 (12)H11A—C11—H11B107.00
C5—C6—C7120.60 (13)C11—C12—H12A109.00
C6—C7—C8119.93 (12)C11—C12—H12B109.00
C3—C8—C7118.98 (11)C13—C12—H12A108.00
C2—C9—C10115.55 (10)C13—C12—H12B108.00
C9—C10—C11113.31 (11)H12A—C12—H12B108.00
C10—C11—C12115.62 (12)C12—C13—H13A109.00
C11—C12—C13115.09 (12)C12—C13—H13B109.00
C12—C13—C14112.85 (11)C14—C13—H13A109.00
C2—C14—C13114.07 (9)C14—C13—H13B109.00
C3—C4—H4120.00H13A—C13—H13B108.00
C5—C4—H4120.00C2—C14—H14A109.00
C4—C5—H5120.00C2—C14—H14B109.00
C6—C5—H5120.00C13—C14—H14A109.00
C5—C6—H6120.00C13—C14—H14B109.00
C7—C6—H6120.00H14A—C14—H14B108.00
C2—N1—C1—S1179.77 (9)N1—C2—C9—C10−93.43 (12)
C2—N1—C1—N3−1.29 (12)N2—C2—C9—C10155.42 (10)
C3—N1—C1—S112.16 (18)C14—C2—C9—C1035.32 (14)
C3—N1—C1—N3−168.90 (10)N1—C2—C14—C13173.50 (11)
C1—N1—C2—N20.83 (12)N2—C2—C14—C13−77.06 (14)
C1—N1—C2—C9−115.21 (11)C9—C2—C14—C1344.03 (14)
C1—N1—C2—C14114.23 (11)N1—C3—C4—C5176.23 (12)
C3—N1—C2—N2168.68 (9)C8—C3—C4—C5−1.9 (2)
C3—N1—C2—C952.64 (14)N1—C3—C8—C7−176.32 (13)
C3—N1—C2—C14−77.92 (14)C4—C3—C8—C71.8 (2)
C1—N1—C3—C467.68 (16)C3—C4—C5—C60.6 (2)
C1—N1—C3—C8−114.17 (14)C4—C5—C6—C70.7 (2)
C2—N1—C3—C4−98.41 (14)C5—C6—C7—C8−0.9 (2)
C2—N1—C3—C879.74 (15)C6—C7—C8—C3−0.4 (2)
C2—N2—N3—C1−0.83 (13)C2—C9—C10—C11−87.16 (13)
N3—N2—C2—N10.05 (13)C9—C10—C11—C1271.74 (14)
N3—N2—C2—C9118.86 (11)C10—C11—C12—C13−52.16 (16)
N3—N2—C2—C14−116.42 (11)C11—C12—C13—C1470.85 (14)
N2—N3—C1—S1−179.60 (9)C12—C13—C14—C2−91.21 (13)
N2—N3—C1—N11.35 (13)
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4.  4-Phenyl-1,2,4-tri-aza-spiro-[4.5]dec-1-ene-3-thione.

Authors:  Mehmet Akkurt; Joel T Mague; Shaaban K Mohamed; Alaa A Hassan; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13

5.  4-Phenyl-1,2,4-tri-aza-spiro-[4.4]non-1-ene-3-thione.

Authors:  Joel T Mague; Shaaban K Mohamed; Mehmet Akkurt; Alaa A Hassan; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-15
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