Literature DB >> 24940194

Di-chlorido-(4,4'-di-tert-butyl-2,2'-bi-pyridine-κ(2) N,N')palladium(II) dimethyl sulfoxide monosolvate monohydrate.

Ricardo A Gutiérrez-Márquez1, Carmela Crisóstomo-Lucas1, Reyna Reyes-Martínez1, Simón Hernández-Ortega1, David Morales-Morales1.   

Abstract

The title compound, [PdCl2(C18H24N2)]·(CH3)2SO·H2O, the Pd(II) ion is in a distorted square-planar geometry. The Pd-N bond distances are 2.022 (2) and 2.027 (2) Å, the Pd-Cl bond distances are 2.2880 (7) and 2.2833 (7) Å, and the ligand bite angle is 80.07 (9)°. The dimethyl sulfoxide and water mol-ecules form linear chains along [100] by O-H⋯O and O-H⋯S hydrogen bonds, generating eight- and 12-membered rings. C-H⋯Cl inter-actions link the chains, forming a three-dimensional arrangement. In addition, the 4,4-di-tert-butyl-2,2'-bi-pyridine ligand exhibits π-π stacking inter-actions [centroid-centroid distances = 3.8741 (15) and 3.8353 (15) Å]. The DMSO solvent is disordered and was refined with an occupancy ratio of 0.866 (3):0.134 (3).

Entities:  

Year:  2014        PMID: 24940194      PMCID: PMC4051021          DOI: 10.1107/S1600536814009453

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For compounds with NN ligands, see: Corona-Rodríguez et al. (2007 ▶); Basauri-Molina et al. (2010 ▶). For the crystal structure of non-solvated compound, see: Qin et al. (2002 ▶); MacLean et al. (2002 ▶). For metallomacrocycles, see: Qin et al. (2002 ▶); Tzeng et al. (2001 ▶). For similar compounds and their crystal structures, see: Jones et al. (2007 ▶).

Experimental

Crystal data

[PdCl2(C18H24N2)]·C2H6OS·H2O M = 541.83 Monoclinic, a = 7.4869 (3) Å b = 19.5052 (8) Å c = 16.8538 (7) Å β = 102.907 (1)° V = 2399.03 (17) Å3 Z = 4 Mo Kα radiation μ = 1.10 mm−1 T = 298 K 0.42 × 0.19 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: analytical (SADABS; Sheldrick, 2008 ▶) T min = 0.780, T max = 0.932 13351 measured reflections 4343 independent reflections 3766 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.076 S = 1.01 4343 reflections 302 parameters 118 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814009453/pj2010sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814009453/pj2010Isup2.hkl Additional supporting information: crystallographic information; 3D view; checkCIF report
[PdCl2(C18H24N2)]·C2H6OS·H2OF(000) = 1112
Mr = 541.83Dx = 1.500 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.4869 (3) ÅCell parameters from 9545 reflections
b = 19.5052 (8) Åθ = 2.4–25.3°
c = 16.8538 (7) ŵ = 1.10 mm1
β = 102.907 (1)°T = 298 K
V = 2399.03 (17) Å3Prism, yellow
Z = 40.42 × 0.19 × 0.09 mm
Bruker APEXII CCD area-detector diffractometer3766 reflections with I > 2σ(I)
Detector resolution: 0.83 pixels mm-1Rint = 0.030
ω scansθmax = 25.3°, θmin = 2.1°
Absorption correction: analytical (SADABS; Sheldrick, 2008)h = −9→8
Tmin = 0.780, Tmax = 0.932k = −22→23
13351 measured reflectionsl = −20→17
4343 independent reflections
Refinement on F2118 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.042P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.002
4343 reflectionsΔρmax = 0.39 e Å3
302 parametersΔρmin = −0.55 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Pd10.23053 (3)0.61408 (2)0.50569 (2)0.02992 (9)
Cl10.06474 (11)0.69947 (4)0.42999 (5)0.0527 (2)
Cl20.38522 (12)0.69340 (4)0.59479 (5)0.0573 (2)
N10.3456 (3)0.53217 (10)0.57115 (12)0.0297 (5)
C20.3043 (3)0.47048 (12)0.53503 (14)0.0282 (5)
C30.3586 (3)0.40999 (13)0.57591 (15)0.0325 (6)
H30.33090.36840.54900.039*
C40.4548 (3)0.41033 (14)0.65727 (15)0.0342 (6)
C50.4957 (4)0.47497 (14)0.69216 (16)0.0378 (6)
H50.56110.47830.74590.045*
C60.4416 (4)0.53308 (14)0.64896 (15)0.0373 (6)
H60.47210.57520.67410.045*
N70.1298 (3)0.53767 (10)0.42684 (12)0.0296 (5)
C80.1932 (3)0.47392 (12)0.45083 (14)0.0274 (5)
C90.1545 (3)0.41861 (13)0.39897 (15)0.0337 (6)
H90.19800.37550.41730.040*
C100.0514 (3)0.42587 (13)0.31945 (15)0.0333 (6)
C11−0.0115 (4)0.49177 (14)0.29707 (15)0.0375 (6)
H11−0.08130.49960.24490.045*
C120.0281 (3)0.54553 (13)0.35099 (15)0.0358 (6)
H12−0.01710.58880.33430.043*
C130.5026 (4)0.34551 (14)0.70770 (17)0.0407 (6)
C140.3815 (5)0.34392 (17)0.7700 (2)0.0599 (9)
H14A0.40210.38460.80280.072*
H14B0.41140.30430.80430.072*
H14C0.25500.34180.74200.072*
C150.7021 (4)0.34643 (18)0.7528 (2)0.0623 (9)
H15A0.77900.34440.71420.075*
H15B0.72660.30760.78850.075*
H15C0.72700.38790.78400.075*
C160.4686 (5)0.28042 (15)0.6560 (2)0.0601 (9)
H16A0.34080.27720.63030.072*
H16B0.50420.24110.69010.072*
H16C0.53940.28210.61500.072*
C170.0188 (4)0.36691 (14)0.25874 (17)0.0419 (7)
C18−0.1755 (5)0.36822 (19)0.2081 (2)0.0730 (11)
H18A−0.26000.36620.24330.088*
H18B−0.19480.32950.17200.088*
H18C−0.19510.40980.17680.088*
C190.1540 (6)0.3743 (2)0.2040 (2)0.0750 (12)
H19A0.13740.41810.17740.090*
H19B0.13310.33860.16380.090*
H19C0.27680.37090.23620.090*
C200.0506 (5)0.29733 (16)0.3010 (2)0.0643 (10)
H20A0.17750.29290.32770.077*
H20B0.01800.26150.26130.077*
H20C−0.02370.29380.34040.077*
S10.13101 (19)0.11340 (6)0.41808 (7)0.0740 (4)0.866 (3)
O10.2143 (7)0.0432 (3)0.4267 (4)0.1113 (14)0.866 (3)
C21−0.0510 (7)0.1118 (3)0.4701 (4)0.0994 (19)0.866 (3)
H21A−0.14880.08370.44050.119*0.866 (3)
H21B−0.09510.15760.47420.119*0.866 (3)
H21C−0.00740.09330.52370.119*0.866 (3)
C220.2808 (10)0.1680 (3)0.4875 (4)0.112 (2)0.866 (3)
H22A0.39150.17510.46880.135*0.866 (3)
H22B0.30990.14690.54040.135*0.866 (3)
H22C0.22190.21120.49080.135*0.866 (3)
S1A0.2169 (17)0.0735 (7)0.4816 (7)0.114 (3)0.134 (3)
O1A0.258 (4)0.0344 (17)0.411 (2)0.113 (5)0.134 (3)
C21A−0.028 (2)0.0783 (19)0.463 (2)0.094 (5)0.134 (3)
H21D−0.07710.03340.46780.112*0.134 (3)
H21E−0.07540.09530.40860.112*0.134 (3)
H21F−0.06280.10860.50150.112*0.134 (3)
C22A0.252 (5)0.1620 (9)0.462 (3)0.107 (6)0.134 (3)
H22D0.38070.17060.46820.128*0.134 (3)
H22E0.20530.18990.49960.128*0.134 (3)
H22F0.18900.17300.40730.128*0.134 (3)
O20.4246 (8)1.0021 (3)0.5968 (3)0.1554 (16)
H2A0.522 (6)0.990 (4)0.580 (4)0.187*
H2B0.377 (10)1.015 (4)0.5472 (18)0.187*
U11U22U33U12U13U23
Pd10.03419 (14)0.02250 (12)0.03379 (13)−0.00049 (8)0.00909 (9)−0.00093 (7)
Cl10.0637 (5)0.0305 (4)0.0592 (5)0.0118 (3)0.0034 (4)0.0048 (3)
Cl20.0757 (6)0.0323 (4)0.0567 (5)−0.0099 (4)−0.0007 (4)−0.0110 (3)
N10.0307 (11)0.0271 (11)0.0323 (11)−0.0022 (9)0.0088 (9)−0.0002 (9)
C20.0255 (12)0.0305 (13)0.0293 (12)−0.0005 (10)0.0076 (10)0.0003 (10)
C30.0354 (14)0.0260 (13)0.0362 (14)0.0010 (11)0.0085 (12)0.0021 (11)
C40.0300 (14)0.0382 (14)0.0352 (14)0.0019 (11)0.0088 (11)0.0066 (12)
C50.0376 (15)0.0417 (16)0.0307 (13)−0.0020 (12)0.0005 (12)0.0037 (12)
C60.0420 (16)0.0359 (15)0.0322 (13)−0.0025 (12)0.0043 (12)−0.0019 (11)
N70.0322 (11)0.0267 (11)0.0311 (11)−0.0001 (9)0.0097 (9)0.0005 (9)
C80.0264 (13)0.0269 (13)0.0299 (12)−0.0012 (10)0.0086 (10)0.0026 (10)
C90.0381 (15)0.0271 (13)0.0363 (14)−0.0003 (11)0.0094 (12)−0.0007 (11)
C100.0297 (14)0.0356 (15)0.0355 (13)−0.0055 (11)0.0088 (11)−0.0029 (11)
C110.0370 (15)0.0424 (16)0.0294 (13)−0.0016 (12)−0.0007 (12)0.0018 (12)
C120.0361 (15)0.0314 (14)0.0383 (14)0.0022 (11)0.0051 (12)0.0067 (11)
C130.0383 (15)0.0392 (16)0.0434 (16)0.0051 (13)0.0068 (13)0.0109 (13)
C140.066 (2)0.057 (2)0.062 (2)0.0104 (17)0.0274 (18)0.0289 (17)
C150.0480 (19)0.062 (2)0.071 (2)0.0108 (17)−0.0007 (17)0.0235 (18)
C160.068 (2)0.0397 (17)0.068 (2)0.0097 (16)0.0046 (18)0.0151 (16)
C170.0435 (17)0.0425 (16)0.0383 (15)−0.0064 (13)0.0059 (13)−0.0109 (13)
C180.060 (2)0.064 (2)0.080 (3)−0.0053 (18)−0.015 (2)−0.031 (2)
C190.089 (3)0.083 (3)0.062 (2)−0.026 (2)0.037 (2)−0.036 (2)
C200.083 (3)0.0400 (18)0.066 (2)−0.0046 (17)0.010 (2)−0.0193 (16)
S10.0947 (10)0.0791 (9)0.0486 (6)−0.0027 (6)0.0171 (6)−0.0019 (5)
O10.129 (4)0.086 (2)0.125 (4)0.013 (2)0.040 (3)−0.020 (3)
C210.108 (4)0.129 (6)0.065 (3)0.002 (3)0.026 (3)−0.006 (4)
C220.144 (5)0.115 (4)0.078 (4)−0.035 (4)0.024 (4)−0.025 (3)
S1A0.138 (5)0.114 (6)0.085 (5)−0.003 (5)0.010 (5)0.002 (5)
O1A0.123 (10)0.108 (9)0.104 (10)0.005 (10)0.015 (9)−0.005 (8)
C21A0.135 (6)0.085 (11)0.058 (10)0.006 (8)0.016 (9)0.010 (11)
C22A0.140 (11)0.113 (7)0.066 (12)−0.012 (9)0.020 (11)−0.009 (9)
O20.173 (5)0.174 (4)0.126 (3)0.025 (4)0.047 (3)0.023 (3)
Pd1—N12.022 (2)C16—H16B0.9600
Pd1—N72.027 (2)C16—H16C0.9600
Pd1—Cl22.2833 (7)C17—C181.513 (4)
Pd1—Cl12.2880 (7)C17—C191.522 (4)
N1—C61.347 (3)C17—C201.526 (4)
N1—C21.353 (3)C18—H18A0.9600
C2—C31.381 (3)C18—H18B0.9600
C2—C81.477 (3)C18—H18C0.9600
C3—C41.399 (3)C19—H19A0.9600
C3—H30.9300C19—H19B0.9600
C4—C51.396 (4)C19—H19C0.9600
C4—C131.521 (4)C20—H20A0.9600
C5—C61.359 (4)C20—H20B0.9600
C5—H50.9300C20—H20C0.9600
C6—H60.9300S1—O11.498 (5)
N7—C121.342 (3)S1—C211.777 (5)
N7—C81.360 (3)S1—C221.782 (5)
C8—C91.378 (3)C21—H21A0.9600
C9—C101.396 (3)C21—H21B0.9600
C9—H90.9300C21—H21C0.9600
C10—C111.392 (4)C22—H22A0.9600
C10—C171.522 (4)C22—H22B0.9600
C11—C121.376 (4)C22—H22C0.9600
C11—H110.9300S1A—O1A1.504 (12)
C12—H120.9300S1A—C22A1.789 (9)
C13—C151.517 (4)S1A—C21A1.792 (9)
C13—C161.529 (4)C21A—H21D0.9600
C13—C141.534 (4)C21A—H21E0.9600
C14—H14A0.9600C21A—H21F0.9600
C14—H14B0.9600C22A—H22D0.9600
C14—H14C0.9600C22A—H22E0.9600
C15—H15A0.9600C22A—H22F0.9600
C15—H15B0.9600O2—H2A0.869 (10)
C15—H15C0.9600O2—H2B0.867 (10)
C16—H16A0.9600
N1—Pd1—N780.07 (9)C13—C16—H16B109.5
N1—Pd1—Cl294.87 (6)H16A—C16—H16B109.5
N7—Pd1—Cl2171.60 (6)C13—C16—H16C109.5
N1—Pd1—Cl1172.53 (6)H16A—C16—H16C109.5
N7—Pd1—Cl195.37 (6)H16B—C16—H16C109.5
Cl2—Pd1—Cl190.33 (3)C18—C17—C19110.0 (3)
C6—N1—C2117.9 (2)C18—C17—C10110.9 (2)
C6—N1—Pd1126.19 (17)C19—C17—C10107.9 (2)
C2—N1—Pd1115.51 (16)C18—C17—C20108.0 (3)
N1—C2—C3121.5 (2)C19—C17—C20108.2 (3)
N1—C2—C8114.5 (2)C10—C17—C20111.9 (2)
C3—C2—C8123.9 (2)C17—C18—H18A109.5
C2—C3—C4121.0 (2)C17—C18—H18B109.5
C2—C3—H3119.5H18A—C18—H18B109.5
C4—C3—H3119.5C17—C18—H18C109.5
C5—C4—C3115.7 (2)H18A—C18—H18C109.5
C5—C4—C13120.9 (2)H18B—C18—H18C109.5
C3—C4—C13123.3 (2)C17—C19—H19A109.5
C6—C5—C4121.1 (2)C17—C19—H19B109.5
C6—C5—H5119.5H19A—C19—H19B109.5
C4—C5—H5119.5C17—C19—H19C109.5
N1—C6—C5122.7 (2)H19A—C19—H19C109.5
N1—C6—H6118.6H19B—C19—H19C109.5
C5—C6—H6118.6C17—C20—H20A109.5
C12—N7—C8118.3 (2)C17—C20—H20B109.5
C12—N7—Pd1126.10 (17)H20A—C20—H20B109.5
C8—N7—Pd1115.04 (16)C17—C20—H20C109.5
N7—C8—C9121.1 (2)H20A—C20—H20C109.5
N7—C8—C2114.3 (2)H20B—C20—H20C109.5
C9—C8—C2124.6 (2)O1—S1—C21106.5 (3)
C8—C9—C10121.5 (2)O1—S1—C22107.1 (3)
C8—C9—H9119.3C21—S1—C2297.2 (3)
C10—C9—H9119.3S1—C21—H21A109.5
C11—C10—C9115.8 (2)S1—C21—H21B109.5
C11—C10—C17121.4 (2)H21A—C21—H21B109.5
C9—C10—C17122.7 (2)S1—C21—H21C109.5
C12—C11—C10121.0 (2)H21A—C21—H21C109.5
C12—C11—H11119.5H21B—C21—H21C109.5
C10—C11—H11119.5S1—C22—H22A109.5
N7—C12—C11122.3 (2)S1—C22—H22B109.5
N7—C12—H12118.8H22A—C22—H22B109.5
C11—C12—H12118.8S1—C22—H22C109.5
C15—C13—C4110.6 (2)H22A—C22—H22C109.5
C15—C13—C16108.4 (3)H22B—C22—H22C109.5
C4—C13—C16112.5 (2)O1A—S1A—C22A106.1 (8)
C15—C13—C14108.9 (3)O1A—S1A—C21A105.7 (8)
C4—C13—C14107.3 (2)C22A—S1A—C21A96.0 (7)
C16—C13—C14109.0 (3)S1A—C21A—H21D109.5
C13—C14—H14A109.5S1A—C21A—H21E109.5
C13—C14—H14B109.5H21D—C21A—H21E109.5
H14A—C14—H14B109.5S1A—C21A—H21F109.5
C13—C14—H14C109.5H21D—C21A—H21F109.5
H14A—C14—H14C109.5H21E—C21A—H21F109.5
H14B—C14—H14C109.5S1A—C22A—H22D109.5
C13—C15—H15A109.5S1A—C22A—H22E109.5
C13—C15—H15B109.5H22D—C22A—H22E109.5
H15A—C15—H15B109.5S1A—C22A—H22F109.5
C13—C15—H15C109.5H22D—C22A—H22F109.5
H15A—C15—H15C109.5H22E—C22A—H22F109.5
H15B—C15—H15C109.5H2A—O2—H2B88 (6)
C13—C16—H16A109.5
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1i0.87 (1)2.11 (2)2.954 (7)165 (7)
O2—H2A···S1Ai0.87 (1)2.71 (2)3.565 (14)167 (7)
O2—H2A···O1Ai0.87 (1)1.68 (4)2.51 (3)157 (8)
O2—H2B···O1ii0.87 (1)2.20 (2)3.054 (9)171 (7)
O2—H2B···S1Aii0.87 (1)1.84 (4)2.604 (12)146 (7)
O2—H2B···O1Aii0.87 (1)2.30 (4)3.17 (4)173 (7)
C14—H14B···Cl2iii0.962.963.884 (1)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2A⋯O1i 0.87 (1)2.11 (2)2.954 (7)165 (7)
O2—H2A⋯S1A i 0.87 (1)2.71 (2)3.565 (14)167 (7)
O2—H2A⋯O1A i 0.87 (1)1.68 (4)2.51 (3)157 (8)
O2—H2B⋯O1ii 0.87 (1)2.20 (2)3.054 (9)171 (7)
O2—H2B⋯S1A ii 0.87 (1)1.84 (4)2.604 (12)146 (7)
O2—H2B⋯O1A ii 0.87 (1)2.30 (4)3.17 (4)173 (7)
C14—H14B⋯Cl2iii 0.962.963.884 (1)163

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Molecular triangle of palladium(II) and its anion binding properties.

Authors:  Zengquan Qin; Michael C Jennings; Richard J Puddephatt
Journal:  Inorg Chem       Date:  2002-07-29       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Palladium(II) and platinum(II) analogues of luminescent diimine Triangulo complexes supported by triply bridging sulfide ligands: structural and spectroscopic comparisons.

Authors:  B C Tzeng; S C Chan; M C Chan; C M Che; K K Cheung; S M Peng
Journal:  Inorg Chem       Date:  2001-12-17       Impact factor: 5.165

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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