Literature DB >> 24939963

Plasmid-based shRNA lentiviral particle production for RNAi applications.

David Shum1, Hakim Djaballah2.   

Abstract

Lentiviral vectors have become mainstream gene transfer vehicles for their ability to deliver and integrate into host cells. In RNA interference (RNAi) applications, lentiviral constructs constitutively express double-stranded RNA molecules, usually as short hairpin RNA (shRNA), enabling long-term gene silencing, and, when pseudotyped with a broad host glycoprotein envelope, allow a multitude of cell types to be transduced. Their successful use ultimately relies on the production of lentiviral particles in high titer and uniformity. Typical methods require the transfection of three or more plasmids in which essential viral elements have been encoded separated so as to remain replication deficient. These transfection procedures are of critical importance; however, methods often vary among laboratories, making it difficult to assess the overall efficiency of lentiviral particle production. In this report, we focus exclusively on this step and compare the overall impact of the commercial transfection reagent FuGENE 6 with FuGENE HD. We found that FuGENE HD resulted in at least 5-fold improvement in viral particle titer as assessed by the p24 standard enzyme-linked immunosorbent assay. We present the complete optimized workflow and demonstrate this utility in which a single modification of this transfection step improved the lentiviral particle production.
© 2014 Society for Laboratory Automation and Screening.

Entities:  

Keywords:  DNA; FuGENE 6; FuGENE HD; RNAi; lentiviral particles; plasmid; shRNA; viral titer

Mesh:

Substances:

Year:  2014        PMID: 24939963      PMCID: PMC4170048          DOI: 10.1177/1087057114539390

Source DB:  PubMed          Journal:  J Biomol Screen        ISSN: 1087-0571


  7 in total

1.  A high content assay to assess cellular fitness.

Authors:  Christophe Antczak; Jeni P Mahida; Chanpreet Singh; Paul A Calder; Hakim Djaballah
Journal:  Comb Chem High Throughput Screen       Date:  2014-01       Impact factor: 1.339

Review 2.  Short hairpin RNA-mediated gene silencing.

Authors:  Luke S Lambeth; Craig A Smith
Journal:  Methods Mol Biol       Date:  2013

Review 3.  A novel lentivirus for quantitative assessment of gene knockdown in stem cell differentiation.

Authors:  S Alimperti; P Lei; J Tian; S T Andreadis
Journal:  Gene Ther       Date:  2012-01-12       Impact factor: 5.250

Review 4.  Genome-scale loss-of-function screening with a lentiviral RNAi library.

Authors:  David E Root; Nir Hacohen; William C Hahn; Eric S Lander; David M Sabatini
Journal:  Nat Methods       Date:  2006-09       Impact factor: 28.547

5.  A third-generation lentivirus vector with a conditional packaging system.

Authors:  T Dull; R Zufferey; M Kelly; R J Mandel; M Nguyen; D Trono; L Naldini
Journal:  J Virol       Date:  1998-11       Impact factor: 5.103

6.  Self-inactivating lentivirus vector for safe and efficient in vivo gene delivery.

Authors:  R Zufferey; T Dull; R J Mandel; A Bukovsky; D Quiroz; L Naldini; D Trono
Journal:  J Virol       Date:  1998-12       Impact factor: 5.103

7.  Systematic analysis of RNAi reports identifies dismal commonality at gene-level and reveals an unprecedented enrichment in pooled shRNA screens.

Authors:  Bhavneet Bhinder; Hakim Djaballah
Journal:  Comb Chem High Throughput Screen       Date:  2013-11       Impact factor: 1.339

  7 in total
  2 in total

1.  Targeting of Liver Mannan-Binding Lectin-Associated Serine Protease-3 with RNA Interference Ameliorates Disease in a Mouse Model of Rheumatoid Arthritis.

Authors:  Nirmal K Banda; V Michael Holers; Dhruv Desai; Robert I Scheinman; Rasmus Pihl; Hideharu Sekine; Teizo Fujita; Vibha Sharma; Annette G Hansen; Peter Garred; Steffen Thiel; Anna Borodovsky
Journal:  Immunohorizons       Date:  2018-09

2.  Expression of the receptor for hyaluronic acid mediated motility (RHAMM) is associated with poor prognosis and metastasis in non-small cell lung carcinoma.

Authors:  Dunrui Wang; Navneet Narula; Stephanie Azzopardi; Roger S Smith; Abu Nasar; Nasser K Altorki; Vivek Mittal; Romel Somwar; Brendon M Stiles; Yi-Chieh Nancy Du
Journal:  Oncotarget       Date:  2016-06-28
  2 in total

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