Literature DB >> 24939585

Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.

Erik Fransen1, Sarah Bonneux2, Jason J Corneveaux3, Isabelle Schrauwen4, Federica Di Berardino5, Cory H White6, Jeffrey D Ohmen6, Paul Van de Heyning7, Umberto Ambrosetti5, Matthew J Huentelman3, Guy Van Camp2, Rick A Friedman6.   

Abstract

We performed a genome-wide association study (GWAS) to identify the genes responsible for age-related hearing impairment (ARHI), the most common form of hearing impairment in the elderly. Analysis of common variants, with and without adjustment for stratification and environmental covariates, rare variants and interactions, as well as gene-set enrichment analysis, showed no variants with genome-wide significance. No evidence for replication of any previously reported genes was found. A study of the genetic architecture indicates for the first time that ARHI is highly polygenic in nature, with probably no major genes involved. The phenotype depends on the aggregated effect of a large number of SNPs, of which the individual effects are undetectable in a modestly powered GWAS. We estimated that 22% of the variance in our data set can be explained by the collective effect of all genotyped SNPs. A score analysis showed a modest enrichment in causative SNPs among the SNPs with a P-value below 0.01.

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Year:  2014        PMID: 24939585      PMCID: PMC4266741          DOI: 10.1038/ejhg.2014.56

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  19 in total

1.  A new multipoint method for genome-wide association studies by imputation of genotypes.

Authors:  Jonathan Marchini; Bryan Howie; Simon Myers; Gil McVean; Peter Donnelly
Journal:  Nat Genet       Date:  2007-06-17       Impact factor: 38.330

Review 2.  Presbycusis.

Authors:  George A Gates; John H Mills
Journal:  Lancet       Date:  2005 Sep 24-30       Impact factor: 79.321

3.  Developmental expression of the TGF beta s in the mouse cochlea.

Authors:  N E Paradies; L P Sanford; T Doetschman; R A Friedman
Journal:  Mech Dev       Date:  1998-12       Impact factor: 1.882

Review 4.  Age-related hearing loss or presbycusis.

Authors:  Qi Huang; Jianguo Tang
Journal:  Eur Arch Otorhinolaryngol       Date:  2010-05-13       Impact factor: 2.503

5.  GRM7 variants confer susceptibility to age-related hearing impairment.

Authors:  Rick A Friedman; Lut Van Laer; Matthew J Huentelman; Sonal S Sheth; Els Van Eyken; Jason J Corneveaux; Waibhav D Tembe; Rebecca F Halperin; Ashley Q Thorburn; Sofie Thys; Sarah Bonneux; Erik Fransen; Jeroen Huyghe; Ilmari Pyykkö; Cor W R J Cremers; Hannie Kremer; Ingeborg Dhooge; Dafydd Stephens; Eva Orzan; Markus Pfister; Michael Bille; Agnete Parving; Martti Sorri; Paul H Van de Heyning; Linna Makmura; Jeffrey D Ohmen; Frederick H Linthicum; Jose N Fayad; John V Pearson; David W Craig; Dietrich A Stephan; Guy Van Camp
Journal:  Hum Mol Genet       Date:  2008-12-01       Impact factor: 6.150

6.  The grainyhead like 2 gene (GRHL2), alias TFCP2L3, is associated with age-related hearing impairment.

Authors:  Lut Van Laer; Els Van Eyken; Erik Fransen; Jeroen R Huyghe; Vedat Topsakal; Jan-Jaap Hendrickx; Samuli Hannula; Elina Mäki-Torkko; Mona Jensen; Kelly Demeester; Manuela Baur; Amanda Bonaconsa; Manuela Mazzoli; Angeles Espeso; Katia Verbruggen; Joke Huyghe; Patrick Huygen; Sylvia Kunst; Minna Manninen; Annelies Konings; Amalia N Diaz-Lacava; Michael Steffens; Thomas F Wienker; Ilmari Pyykkö; Cor W R J Cremers; Hannie Kremer; Ingeborg Dhooge; Dafydd Stephens; Eva Orzan; Markus Pfister; Michael Bille; Agnete Parving; Martti Sorri; Paul H Van de Heyning; Guy Van Camp
Journal:  Hum Mol Genet       Date:  2007-10-06       Impact factor: 6.150

7.  A genome-wide association study for age-related hearing impairment in the Saami.

Authors:  Lut Van Laer; Jeroen R Huyghe; Samuli Hannula; Els Van Eyken; Dietrich A Stephan; Elina Mäki-Torkko; Pekka Aikio; Erik Fransen; Alana Lysholm-Bernacchi; Martti Sorri; Matthew J Huentelman; Guy Van Camp
Journal:  Eur J Hum Genet       Date:  2010-01-13       Impact factor: 4.246

8.  Transforming growth factor beta expression during an inner ear immune response.

Authors:  Hitoshi Satoh; Peter Billings; Gary S Firestein; Jeffrey P Harris; Elizabeth M Keithley
Journal:  Ann Otol Rhinol Laryngol       Date:  2006-01       Impact factor: 1.547

9.  Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.

Authors:  Shaun M Purcell; Naomi R Wray; Jennifer L Stone; Peter M Visscher; Michael C O'Donovan; Patrick F Sullivan; Pamela Sklar
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

10.  Occupational noise, smoking, and a high body mass index are risk factors for age-related hearing impairment and moderate alcohol consumption is protective: a European population-based multicenter study.

Authors:  Erik Fransen; Vedat Topsakal; Jan-Jaap Hendrickx; Lut Van Laer; Jeroen R Huyghe; Els Van Eyken; Nele Lemkens; Samuli Hannula; Elina Mäki-Torkko; Mona Jensen; Kelly Demeester; Anke Tropitzsch; Amanda Bonaconsa; Manuela Mazzoli; Angeles Espeso; Katia Verbruggen; Joke Huyghe; Patrick L M Huygen; Sylvia Kunst; Minna Manninen; Amalia Diaz-Lacava; Michael Steffens; Thomas F Wienker; Ilmari Pyykkö; Cor W R J Cremers; Hannie Kremer; Ingeborg Dhooge; Dafydd Stephens; Eva Orzan; Markus Pfister; Michael Bille; Agnete Parving; Martti Sorri; Paul Van de Heyning; Guy Van Camp
Journal:  J Assoc Res Otolaryngol       Date:  2008-06-10
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  36 in total

1.  Age-associated DNA methylation changes in naive CD4+ T cells suggest an evolving autoimmune epigenotype in aging T cells.

Authors:  Mikhail G Dozmorov; Patrick Coit; Kathleen Maksimowicz-McKinnon; Amr H Sawalha
Journal:  Epigenomics       Date:  2017-03-21       Impact factor: 4.778

2.  Transcriptome profiling of four candidate milk genes in milk and tissue samples of temperate and tropical cattle.

Authors:  Olanrewaju B Morenikeji; Mabel O Akinyemi; Mathew Wheto; Olawale J Ogunshola; Adebanjo A Badejo; Clifford A Chineke
Journal:  J Genet       Date:  2019-03       Impact factor: 1.166

3.  A Scalable Bayesian Method for Integrating Functional Information in Genome-wide Association Studies.

Authors:  Jingjing Yang; Lars G Fritsche; Xiang Zhou; Gonçalo Abecasis
Journal:  Am J Hum Genet       Date:  2017-08-24       Impact factor: 11.025

4.  DAPT mediates atoh1 expression to induce hair cell-like cells.

Authors:  Hongmiao Ren; Weiwei Guo; Wei Liu; Weiqiang Gao; Dinghua Xie; Tuanfang Yin; Shiming Yang; Jihao Ren
Journal:  Am J Transl Res       Date:  2016-02-15       Impact factor: 4.060

5.  Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.

Authors:  Heather E Wheeler; Eric R Gamazon; Robert D Frisina; Carlos Perez-Cervantes; Omar El Charif; Brandon Mapes; Sophie D Fossa; Darren R Feldman; Robert J Hamilton; David J Vaughn; Clair J Beard; Chunkit Fung; Christian Kollmannsberger; Jeri Kim; Taisei Mushiroda; Michiaki Kubo; Shirin Ardeshir-Rouhani-Fard; Lawrence H Einhorn; Nancy J Cox; M Eileen Dolan; Lois B Travis
Journal:  Clin Cancer Res       Date:  2016-12-30       Impact factor: 12.531

Review 6.  Application of Mouse Models to Research in Hearing and Balance.

Authors:  Kevin K Ohlemiller; Sherri M Jones; Kenneth R Johnson
Journal:  J Assoc Res Otolaryngol       Date:  2016-10-17

7.  Group testing in mediation analysis.

Authors:  Andriy Derkach; Steven C Moore; Simina M Boca; Joshua N Sampson
Journal:  Stat Med       Date:  2020-05-04       Impact factor: 2.497

Review 8.  Age-Related Hearing Loss.

Authors:  Michael R Bowl; Sally J Dawson
Journal:  Cold Spring Harb Perspect Med       Date:  2019-08-01       Impact factor: 6.915

9.  A comprehensive catalogue of the coding and non-coding transcripts of the human inner ear.

Authors:  Isabelle Schrauwen; Yehudit Hasin-Brumshtein; Jason J Corneveaux; Jeffrey Ohmen; Cory White; April N Allen; Aldons J Lusis; Guy Van Camp; Matthew J Huentelman; Rick A Friedman
Journal:  Hear Res       Date:  2015-09-01       Impact factor: 3.208

10.  GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank.

Authors:  Helena R R Wells; Maxim B Freidin; Fatin N Zainul Abidin; Antony Payton; Piers Dawes; Kevin J Munro; Cynthia C Morton; David R Moore; Sally J Dawson; Frances M K Williams
Journal:  Am J Hum Genet       Date:  2019-09-26       Impact factor: 11.025

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