Literature DB >> 24938113

The complete chloroplast genome sequence of the Phyllostachys sulphurea (Poaceae: Bambusoideae).

Ju Gao1, Li-zhi Gao1,2.   

Abstract

The complete nucleotide sequence of the Phyllostachys sulphurea chloroplast genome (cpDNA) was determined in this study. The cpDNA was 139,731 bp in length, containing a pair of 21,798 bp inverted repeat regions (IR), which were separated by small and large single copy regions (SSC and LSC) of 12,879 and 83,256 bp, respectively. The P. sulphurea cp genome encodes 129 predicted functional genes; 110 are unique (77 protein-coding genes, 29 tRNA genes, 4 rRNA), 19 are duplicated in the IR regions and one gene extended into the IR region in the junctions between IR and SSC. 43.06% of the genome sequence encodes proteins. The P. sulphurea cp genome is AT-rich (61.11%). In these genes, fourteen genes contained one intron, while one gene had two introns.

Entities:  

Keywords:  Bambusoideae; P. sulphurea; chloroplast genome

Mesh:

Substances:

Year:  2014        PMID: 24938113     DOI: 10.3109/19401736.2014.926516

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  3 in total

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Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

2.  Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.

Authors:  Jeffery M Saarela; William P Wysocki; Craig F Barrett; Robert J Soreng; Jerrold I Davis; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin R Mayfield; Melvin R Duvall
Journal:  AoB Plants       Date:  2015-05-04       Impact factor: 3.276

3.  Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming.

Authors:  Nian-Jun Huang; Jiang-Ping Li; Guang-Yao Yang; Fen Yu
Journal:  Mitochondrial DNA B Resour       Date:  2019-12-09       Impact factor: 0.658

  3 in total

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