Literature DB >> 24929089

High-throughput amplification of mature microRNAs in uncharacterized animal models using polyadenylated RNA and stem-loop reverse transcription polymerase chain reaction.

Kyle K Biggar1, Cheng-Wei Wu1, Kenneth B Storey2.   

Abstract

This study makes a significant advancement on a microRNA amplification technique previously used for expression analysis and sequencing in animal models without annotated mature microRNA sequences. As research progresses into the post-genomic era of microRNA prediction and analysis, the need for a rapid and cost-effective method for microRNA amplification is critical to facilitate wide-scale analysis of microRNA expression. To facilitate this requirement, we have reoptimized the design of amplification primers and introduced a polyadenylation step to allow amplification of all mature microRNAs from a single RNA sample. Importantly, this method retains the ability to sequence reverse transcription polymerase chain reaction (RT-PCR) products, validating microRNA-specific amplification.
Copyright © 2014 Elsevier Inc. All rights reserved.

Keywords:  Hibernation; Ictidomys tridecemlineatus; MicroRNA amplification; Polyadenylation; RT–PCR

Mesh:

Substances:

Year:  2014        PMID: 24929089     DOI: 10.1016/j.ab.2014.05.032

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  16 in total

1.  In vivo miRNA delivery in whitefish: Synthetic MiR92b-3p uptake and the efficacy of gene expression silencing.

Authors:  Paweł Brzuzan; Maciej Woźny; Bogdan Lewczuk; Maciej Florczyk; Piotr Gomułka; Paulina Budzińska; Michał Wesołowski; Stefan Dobosz
Journal:  Exp Biol Med (Maywood)       Date:  2019-01-21

2.  c-myc in whitefish (Coregonus lavaretus): structure, expression, and insights into possible posttranscriptional regulatory mechanism.

Authors:  P Brzuzan; C Kramer; A Łakomiak; E Jakimiuk; M Florczyk; M Woźny
Journal:  Fish Physiol Biochem       Date:  2015-05-21       Impact factor: 2.794

3.  Analysis of microRNA expression during the torpor-arousal cycle of a mammalian hibernator, the 13-lined ground squirrel.

Authors:  Cheng-Wei Wu; Kyle K Biggar; Bryan E Luu; Kama E Szereszewski; Kenneth B Storey
Journal:  Physiol Genomics       Date:  2016-04-15       Impact factor: 3.107

4.  Regulation of Smad mediated microRNA transcriptional response in ground squirrels during hibernation.

Authors:  Cheng-Wei Wu; Kenneth B Storey
Journal:  Mol Cell Biochem       Date:  2017-08-05       Impact factor: 3.396

5.  Micromanaging freeze tolerance: the biogenesis and regulation of neuroprotective microRNAs in frozen brains.

Authors:  Hanane Hadj-Moussa; Kenneth B Storey
Journal:  Cell Mol Life Sci       Date:  2018-04-21       Impact factor: 9.261

6.  MicroRNA-21 electrochemiluminescence biosensor based on Co-MOF-N-(4-aminobutyl)-N-ethylisoluminol/Ti3C2Tx composite and duplex-specific nuclease-assisted signal amplification.

Authors:  Yang Jiang; Rong Li; Wenyu He; Qian Li; Xia Yang; Sijia Li; Wanqiao Bai; Yan Li
Journal:  Mikrochim Acta       Date:  2022-03-03       Impact factor: 5.833

7.  MicroRNA regulation in heart and skeletal muscle over the freeze-thaw cycle in the freeze tolerant wood frog.

Authors:  Saumya Bansal; Bryan E Luu; Kenneth B Storey
Journal:  J Comp Physiol B       Date:  2015-12-11       Impact factor: 2.200

8.  Isoflurane and low-level carbon monoxide exposures increase expression of pro-survival miRNA in neonatal mouse heart.

Authors:  Samantha M Logan; Aakriti Gupta; Aili Wang; Richard J Levy; Kenneth B Storey
Journal:  Cell Stress Chaperones       Date:  2021-03-04       Impact factor: 3.667

9.  Methods and compositions for amplification and detection of microRNAs (miRNAs) and noncoding RNAs (ncRNAs) using the signature sequence amplification method (SSAM).

Authors:  Stephen D Ginsberg; Shaoli Che
Journal:  Recent Adv DNA Gene Seq       Date:  2014

10.  MicroRNA-29 is an essential regulator of brain maturation through regulation of CH methylation.

Authors:  Vijay Swahari; Ayumi Nakamura; Emilie Hollville; Hume Stroud; Jeremy M Simon; Travis S Ptacek; Matthew V Beck; Cornelius Flowers; Jiami Guo; Charlotte Plestant; Jie Liang; C Lisa Kurtz; Matt Kanke; Scott M Hammond; You-Wen He; E S Anton; Praveen Sethupathy; Sheryl S Moy; Michael E Greenberg; Mohanish Deshmukh
Journal:  Cell Rep       Date:  2021-04-06       Impact factor: 9.423

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